View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15605_high_44 (Length: 306)
Name: NF15605_high_44
Description: NF15605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15605_high_44 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 16126943 - 16126697
Alignment:
| Q |
20 |
acatcatcaaattgcactttttctagtgatttttcatcacaaggaaaaaatttggacaatagcatcatttgtgaagaccctgaagactcatttgtgacaa |
119 |
Q |
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| T |
16126943 |
acatcatcaaattgcactttttctagtgatttttcatcacaaggaaaaaatttggacaatagcatcatttgtgaagaccctgaagactcatttgtgacaa |
16126844 |
T |
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| Q |
120 |
tgcctcaaattgatgaaagcttttggtcagagacaatgactgatgatgaaactagttccaccatgccatcaaattctatgactatttcacctgaattacc |
219 |
Q |
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| T |
16126843 |
tgcctcaaattgatgaaagcttttggtcagagacaataactgatgatgaaact------------------aattctatgactatttcacatgaattacc |
16126762 |
T |
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| Q |
220 |
aattcaagaatacccttttaataattcagtggaaaatttccaaaatccttttgatgatgatgatg |
284 |
Q |
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| T |
16126761 |
aattcaagaatacccttataataattcattggaaaatttccaaaacccttttgatgatgatgatg |
16126697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 24 - 284
Target Start/End: Complemental strand, 16138038 - 16137787
Alignment:
| Q |
24 |
catcaaattgcactttttctagtgatttttcatcacaaggaaaaaatttggacaatagcatcatttgtgaagaccctgaagactcatttgtgacaatgcc |
123 |
Q |
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| T |
16138038 |
catcaaattgcactttttctagtgatttttcatcacaagaaaaaaatttggacaatagcatcatttgtgaagac---------tcattggtgacaatgcc |
16137948 |
T |
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| Q |
124 |
tcaaattgatgaaagcttttggtcagagacaatgactgatgatgaaactagttccaccatgccatcaaattctatgactatttcacctgaattaccaatt |
223 |
Q |
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| T |
16137947 |
tgaaattgatgaaagcttttggtcagagacagtaattgatgatgaaattagttccaccatgccatcaaattctatgacagtttcaaatgatttaccagat |
16137848 |
T |
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| Q |
224 |
caagaatacccttttaataattcagtggaaaatttccaaaatccttttgatgatgatgatg |
284 |
Q |
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| T |
16137847 |
caacaatgcatttttaataattccgtggaaaattttcaaaacccttttgataatgatgatg |
16137787 |
T |
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