View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15605_high_45 (Length: 306)
Name: NF15605_high_45
Description: NF15605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15605_high_45 |
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| [»] chr1 (5 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 22 - 306
Target Start/End: Complemental strand, 38117597 - 38117314
Alignment:
| Q |
22 |
catcatcaacaaattagtcaagcaagttgaattcaaacaaaggcaagttnnnnnnnnnnntaacattttggggggaaaaggttggactactactgcatct |
121 |
Q |
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| T |
38117597 |
catcatcaacaaattagtcaagcaagttgaattcaaacaaaggcaagttaaaaaaaaaa-taacattttggggggaaaaggttggactactactgcatct |
38117499 |
T |
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| Q |
122 |
ttttaccatgcagcacttacagaattcaagaaacacggtcctgtactcgtgttcatgaaatgccatccctcaagctaaaatgctacagatttatctgtca |
221 |
Q |
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| T |
38117498 |
ttttaccatgcagcacttacagaattcaagaaacacggtcctgtactcgtgttcatgaaatgccatccctcaagctaaaatgctacagatttatctgtca |
38117399 |
T |
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| Q |
222 |
ttaccatcaccatacctccaacaattttaaccatatgtcatgactcatgattacatattttcaagtaaagtttaatctaatgata |
306 |
Q |
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| T |
38117398 |
ttaccatcaccatacctccaacaattttaaccatatgtcatgactcatgattacatattttcaagtaaagtttaatctaatgata |
38117314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 268
Target Start/End: Complemental strand, 38161308 - 38161156
Alignment:
| Q |
109 |
tactactgcatct-ttttaccatgcagcacttacagaattcaagaaaca-cggtcctgtactcgtgttcatgaaatgccatccctcaagctaaaatgcta |
206 |
Q |
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| T |
38161308 |
tactactgcatctcttttaccatgca-cacttacataattcaagaaacattggtcttgt-------ttc-tgaaatgccagccctcaaactaaaatgcta |
38161218 |
T |
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| Q |
207 |
cagatttatctgtcattaccatcaccatacctccaacaattttaaccatatgtcatgactca |
268 |
Q |
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| T |
38161217 |
cagatttatctgtcattactattacactacctccaacaagagtaaccaaatgccatgactca |
38161156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 38139721 - 38139672
Alignment:
| Q |
105 |
ggactactactgcatctttttaccatgcagcacttacagaattcaagaaa |
154 |
Q |
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| T |
38139721 |
ggactattactgcatctttttaccatgcagcacttgtaaaattcaagaaa |
38139672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 38139820 - 38139771
Alignment:
| Q |
22 |
catcatcaacaaattagtcaag-caagttgaattcaaacaaaggcaagtt |
70 |
Q |
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| T |
38139820 |
catcatcaacaaattggtcaaggcaagttaaatacaaacaaaggcaagtt |
38139771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 38161374 - 38161326
Alignment:
| Q |
23 |
atcatcaacaaattagtcaag-caagttgaattcaaacaaaggcaagtt |
70 |
Q |
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| T |
38161374 |
atcaacaacaaattggtcaaggcaagttaaattcaaacaaaggcaagtt |
38161326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 177 - 306
Target Start/End: Complemental strand, 49005245 - 49005116
Alignment:
| Q |
177 |
tgaaatgccatccctcaagctaaaatgctacagatttatctgtcattaccatcaccatacctccaacaattttaaccatatgtcatgactcatgattaca |
276 |
Q |
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| T |
49005245 |
tgaaatgccatccttcaaactaagatgctatagatttatctgtcattactattaccatacctccaacaattttaaccaaatgtcatgaatgatgattaca |
49005146 |
T |
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| Q |
277 |
tattttcaagtaaagtttaatctaatgata |
306 |
Q |
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| T |
49005145 |
tattttcaagtaaagtttaatctaatgata |
49005116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 49005318 - 49005279
Alignment:
| Q |
82 |
taacattttggggggaaaaggttggactactactgcatct |
121 |
Q |
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| T |
49005318 |
taacatttagggggaaaaaggttggactactactgcatct |
49005279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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