View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15605_high_5 (Length: 416)
Name: NF15605_high_5
Description: NF15605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15605_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 22 - 382
Target Start/End: Complemental strand, 49019210 - 49018853
Alignment:
| Q |
22 |
catcatcaaattcaataaataattccaacccagatataaaatttaaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcact |
121 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49019210 |
catcatcaaattcaataaataattccaacccagatgtaaaac--aaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcact |
49019113 |
T |
|
| Q |
122 |
aatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctggacaaaaccaaacaacaatccaaatccnnnnnnnnnnnnnnnnntcac |
221 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
49019112 |
aatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctggacaaaaccaaacaacaacccaaatcc-aaaaaaagtaaaaaaatcac |
49019014 |
T |
|
| Q |
222 |
cattggtaatgnnnnnnntggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcct |
321 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49019013 |
cattgataatcaaaaaaatggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcct |
49018914 |
T |
|
| Q |
322 |
ccaattaattggttttgatcaccaacacaactcacaaacagttccaaaatcactcatgcat |
382 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49018913 |
ccaattaattggttctgatcaccaacacaacacacaaacagttccaaaatcactcatgcat |
49018853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 22 - 373
Target Start/End: Complemental strand, 8345314 - 8344964
Alignment:
| Q |
22 |
catcatcaaattcaataaataattccaacccagatataaaatttaaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcact |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |
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| T |
8345314 |
catcatcaaattcaataaataattccaaaccagatataaaatttaaacttcagaaaaattaattaaaaaggccacatacctgacattctatattttcacc |
8345215 |
T |
|
| Q |
122 |
aatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctggacaaaaccaaacaacaatccaaatccnnnnnnnnnnnnnnnnntcac |
221 |
Q |
| |
|
|||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
8345214 |
aatcaattcatcagaagttgaattggacgaaatccctacatcaattttcctggacaaaaccaaacaacaacccaaatcc-aaaaaaagtaaaaaagtcac |
8345116 |
T |
|
| Q |
222 |
cattggtaatgnnnnnnntggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcct |
321 |
Q |
| |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8345115 |
cattgataatcaagaaaatggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagtcaaacctctactttgtaccatcct |
8345016 |
T |
|
| Q |
322 |
ccaattaattggttttgatcaccaacacaactcacaaacagttccaaaatca |
373 |
Q |
| |
|
|||||||||||||| || ||||||||||||| |||||||||||||||||||| |
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|
| T |
8345015 |
ccaattaattggttctggtcaccaacacaacacacaaacagttccaaaatca |
8344964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 22 - 176
Target Start/End: Original strand, 42824300 - 42824454
Alignment:
| Q |
22 |
catcatcaaattcaataaataattccaacccagatataaaatttaaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcact |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |
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|
| T |
42824300 |
catcatcaaattcaataaataattccaaaccagatataaaatttaaacttcagaaaaattaattaaaaaggccacatacctgacattctatattttcacc |
42824399 |
T |
|
| Q |
122 |
aatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctggac |
176 |
Q |
| |
|
|||||||||| ||||||||||||| || ||||||||||||||||||||||||||| |
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|
| T |
42824400 |
aatcaattcatcagaagttgaattggacgaaatccctacatcaattttcctggac |
42824454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 150 - 373
Target Start/End: Original strand, 42824455 - 42824677
Alignment:
| Q |
150 |
gaaatccctacatcaattttcctggacaaaaccaaacaacaatccaaatccnnnnnnnnnnnnnnnnntcaccattggtaatgnnnnnnntggaagaaga |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| |||||||||| |
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|
| T |
42824455 |
gaaatccctacatcaattttcctggacaaaaccaaacaacaacccaaatccaaaaaaagtaaaaaag-tcaccattgataatcaagaaaatggaagaaga |
42824553 |
T |
|
| Q |
250 |
aaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcctccaattaattggttttgatcaccaacac |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
42824554 |
aaatgaataagcaagtacctttcctaatcccttacctcccttaacagtcaaacctctactttgtaccatcctccaattaattggttctggtcaccaacac |
42824653 |
T |
|
| Q |
350 |
aactcacaaacagttccaaaatca |
373 |
Q |
| |
|
||| |||||||||||||||||||| |
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|
| T |
42824654 |
aacacacaaacagttccaaaatca |
42824677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 50861337 - 50861266
Alignment:
| Q |
99 |
acctgacattctctattttcactaatcaattcaccagaagttgaattcgatgaaatccctacatcaattttc |
170 |
Q |
| |
|
||||| |||||||||||| ||| |||||||||||||| |||||||||||| |||||||| |||||||||||| |
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|
| T |
50861337 |
acctggcattctctatttccaccaatcaattcaccagtagttgaattcgacgaaatcccaacatcaattttc |
50861266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 39073745 - 39073828
Alignment:
| Q |
99 |
acctgacattctctattttcactaatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctggacaaaacc |
182 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| |||| ||||| || |||||| ||||||||||||||| |||||||| |
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|
| T |
39073745 |
acctgacattctctatttccatcaatcaattcaccaaaagtcgaatttgacaaaatccaaacatcaattttcctgcacaaaacc |
39073828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 36588096 - 36588179
Alignment:
| Q |
99 |
acctgacattctctattttcactaatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctggacaaaacc |
182 |
Q |
| |
|
|||||||| ||||||| | | | |||||||||||||||||| ||||| || |||||||| | ||||||||||||| |||||||| |
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|
| T |
36588096 |
acctgacaatctctatatccgccaatcaattcaccagaagtcgaatttgacgaaatcccaagatcaattttcctgcacaaaacc |
36588179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 30331070 - 30331035
Alignment:
| Q |
22 |
catcatcaaattcaataaataattccaacccagata |
57 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
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|
| T |
30331070 |
catcatcaaattcaataaataattccgacccagata |
30331035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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