View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15605_high_6 (Length: 393)
Name: NF15605_high_6
Description: NF15605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15605_high_6 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 22 - 381
Target Start/End: Complemental strand, 39984928 - 39984569
Alignment:
| Q |
22 |
catcatcaatgacaagggtagactttctaaggaagatattgaggagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaag |
121 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| || |||||||| |||||||||||| |
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|
| T |
39984928 |
catcaccaatgacaagggtagactttcaaaggaagacattgagaagatggttcaagaggcagagaagtacaagtcggaagatgaagagcataagaagaag |
39984829 |
T |
|
| Q |
122 |
gtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaaga |
221 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||||| |||| |
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|
| T |
39984828 |
gtcgaggccaagaatgcattggaaaactatgcatacaacatgaggaacaccattaaggatgaaaaaattgcaggaaagcttgattcggatgacaaaaaga |
39984729 |
T |
|
| Q |
222 |
agattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgt |
321 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | ||| |||| |
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|
| T |
39984728 |
agatcgaggacaccattgaggctgctatccagtggctagatgccaaccagcttgcagaggctgatgagtttgaggacaagatgaaggaacttgaaggtgt |
39984629 |
T |
|
| Q |
322 |
ctgcaaccctatcattgccaagatgtgccaaggtggtgcaggtcctgacatgggcgctgc |
381 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
39984628 |
ctgcaaccctatcattgccaagatgtaccaaggtggtgcaggtcctgacatgggtgctgc |
39984569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 357
Target Start/End: Original strand, 8018299 - 8018634
Alignment:
| Q |
22 |
catcatcaatgacaagggtagactttctaaggaagatattgaggagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaag |
121 |
Q |
| |
|
||||| ||||||||| ||||| | ||||||||||| |||||| |||||||| | || ||||| || |||||| | || || || ||||| || |||||| |
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|
| T |
8018299 |
catcaccaatgacaaaggtaggttgtctaaggaagaaattgagaagatggttgaggaagcagaaaaatacaaggctgaagacgaggaacacaaaaagaag |
8018398 |
T |
|
| Q |
122 |
gtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaaga |
221 |
Q |
| |
|
|| || || |||||||| |||||||| || || ||||||||||||||||||||||| || || ||||||| ||||||| | || ||||| |||| |
|
|
| T |
8018399 |
gttgatgcaaagaatgctttggaaaactacgcttacaacatgaggaacacaattaaagacgagaagattggttcaaagctttcacctgaggacaaaaaga |
8018498 |
T |
|
| Q |
222 |
agattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgt |
321 |
Q |
| |
|
||||||| || | ||||| ||||| || |||||| | || ||||||| | |||||||| ||||||||||| || |||||||||||| | || || | |
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|
| T |
8018499 |
agattgatgatgcaattgacgctgcaattcagtggttggacagtaaccagttggcagaggctgatgagtttgaagataagatgaaggaacttgagagcct |
8018598 |
T |
|
| Q |
322 |
ctgcaaccctatcattgccaagatgtgccaaggtgg |
357 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||| |
|
|
| T |
8018599 |
ttgcaacccaatcattgccaagatgtatcaaggtgg |
8018634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 357
Target Start/End: Complemental strand, 8101921 - 8101614
Alignment:
| Q |
50 |
aaggaagatattgaggagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaaggtcgaggccaagaatgcattggaaaatt |
149 |
Q |
| |
|
|||||||| || ||| ||||||| ||||| |||||||| |||||| || ||||| || || ||||||||||| ||||| ||||| | ||||| || | |
|
|
| T |
8101921 |
aaggaagaaatcgagaagatggtccaagaagcagagaaatacaagagtgaagatgaggagcacaagaagaaggttgaggcaaagaactccttggagaact |
8101822 |
T |
|
| Q |
150 |
atgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgaggacaccattgaggctgctat |
249 |
Q |
| |
|
|||||||||||||||| ||||| ||||| || || ||||| ||||||| | ||||||||| |||||||||| | ||||||| || || |
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|
| T |
8101821 |
atgcatacaacatgagaaacaccattaaagacgagaagatcagttcaaagctttcaggaggagacaagaagcagattgaggatgcaattgagggagccat |
8101722 |
T |
|
| Q |
250 |
ccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtgc |
349 |
Q |
| |
|
|| ||||| ||||| ||||||||||| || || ||||||||||| |||||||||||||| | || | |||| ||||| |||||||| ||||||| | |
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|
| T |
8101721 |
tcaatggcttgatgcaaaccagcttgctgaagccgatgagtttgaagacaagatgaaggagcttgagacaatctgtaacccaatcattgcaaagatgtac |
8101622 |
T |
|
| Q |
350 |
caaggtgg |
357 |
Q |
| |
|
|||||||| |
|
|
| T |
8101621 |
caaggtgg |
8101614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 6e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 22 - 374
Target Start/End: Original strand, 17649203 - 17649544
Alignment:
| Q |
22 |
catcatcaatgacaagggtagactttctaaggaagatattgaggagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaag |
121 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| | |||||| ||||||||| ||||||||||||||||||||| || |||||||| |||||| || |
|
|
| T |
17649203 |
catcaccaatgacaagggtagactttcaaaggaaaacattgagaagatggttcgagaggcagagaagtacaagtcggaagatgaagagcataagtag--- |
17649299 |
T |
|
| Q |
122 |
gtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaaga |
221 |
Q |
| |
|
|| ||| |||||||||||||||||| ||| |||||||||||||||| ||||| ||||| ||||||||| |||||||||||||| | |||||||||| |
|
|
| T |
17649300 |
gttaaggacaagaatgcattggaaaactat----acaacatgaggaacaccattaatgatgaaaagattgcatgaaagcttgattccaaagacaagaaga |
17649395 |
T |
|
| Q |
222 |
agattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgt |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||| | ||||||||||||||||||| |||||||||||| | | |||| |
|
|
| T |
17649396 |
---ttgaggacaccattgaggctgctatccagtggctagaccc-aaccagcttgaataggcagatgagtttgaggataagatgaaggaaccgcgaggtgt |
17649491 |
T |
|
| Q |
322 |
ctgcaaccctatcattgccaagatgtgccaaggtggtgcaggtcctgacatgg |
374 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
17649492 |
cggcaaccctatcattgccaagatgtaccaaggtggtgcaggtcttgacatgg |
17649544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 22 - 374
Target Start/End: Original strand, 17706569 - 17706911
Alignment:
| Q |
22 |
catcatcaatgacaagggtagactttctaaggaagatattgaggagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaag |
121 |
Q |
| |
|
||||| |||||||||||| |||||||| ||||||| |||||| |||| |||| |||||| ||||||||||| || || | | |||| ||| ||| || |
|
|
| T |
17706569 |
catcaccaatgacaagggaagactttcaaaggaagtcattgagaagatagttcgagaggcggagaagtacaactcagaagtttaagagcat---aaggag |
17706665 |
T |
|
| Q |
122 |
gtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaaga |
221 |
Q |
| |
|
|| |||||||||||||| ||||||| | |||||||| |||| |||| ||||||||||| |||||||||||||||||||||||| | ||| |||| |
|
|
| T |
17706666 |
gttgaggccaagaatgctatggaaaact----atacaacacgagggacaccattaaggatgaaaagattgcaggaaagcttgattccaaagac---aaga |
17706758 |
T |
|
| Q |
222 |
agattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgt |
321 |
Q |
| |
|
| ||||||||||||||||||||| |||||| ||||||||| || || |||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
17706759 |
aaattgaggacaccattgaggctactatccggtggctagacgccaatcagcttgcagaggcagatgagtttgaggacaagatgaaggaaccagaaggtgt |
17706858 |
T |
|
| Q |
322 |
ctgcaaccctatcattgccaagatgtgccaaggtggtgcaggtcctgacatgg |
374 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||| || ||||| |
|
|
| T |
17706859 |
ctgcaaccctatcattgccaagatgtaccaaggtggtgctggtcttggcatgg |
17706911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 17722080 - 17722122
Alignment:
| Q |
101 |
gatgaagaacataagaagaaggtcgaggccaagaatgcattgg |
143 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||||||||||||||| |
|
|
| T |
17722080 |
gatgaagagcataagaaggaggttgaggccaagaatgcattgg |
17722122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 23 - 356
Target Start/End: Original strand, 23588620 - 23588953
Alignment:
| Q |
23 |
atcatcaatgacaagggtagactttctaaggaagatattgaggagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaagg |
122 |
Q |
| |
|
|||| ||||||||||||||| || || |||||||| |||||| ||||||| || || || || ||||||||||| ||||| || || || || ||||| | |
|
|
| T |
23588620 |
atcaccaatgacaagggtaggctctccaaggaagaaattgagaagatggtgcaggaagctgaaaagtacaagtctgaggacgaggagcacaaaaagaaag |
23588719 |
T |
|
| Q |
123 |
tcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaa |
222 |
Q |
| |
|
| ||||||||||||||| | || || ||||| |||||||||||||||||||| || || ||||||||||| ||| | | | ||||| |||||||| |
|
|
| T |
23588720 |
tggaggccaagaatgcacttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtctgctgatgataagaagaa |
23588819 |
T |
|
| Q |
223 |
gattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtc |
322 |
Q |
| |
|
||||| || | ||||||| ||||| || ||| | |||| || || |||| |||||| ||||| |||||||||||||||||||| |||| | | |
|
|
| T |
23588820 |
aattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatt |
23588919 |
T |
|
| Q |
323 |
tgcaaccctatcattgccaagatgtgccaaggtg |
356 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||| |
|
|
| T |
23588920 |
tgcaaccctatcattgcaaggatgtatcaaggtg |
23588953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 356
Target Start/End: Original strand, 23597477 - 23597805
Alignment:
| Q |
28 |
caatgacaagggtagactttctaaggaagatattgaggagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaaggtcgag |
127 |
Q |
| |
|
||||||||||||||| || || ||||| || |||||| | ||||| || || || || |||||||| ||||||||||| || || || | |||||| ||| |
|
|
| T |
23597477 |
caatgacaagggtaggctctccaaggaggacattgagaaaatggtgcaggaagcggaaaagtacaaatccgaggatgaggagcacaaaaggaaggtggag |
23597576 |
T |
|
| Q |
128 |
gccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattg |
227 |
Q |
| |
|
||||| ||||| | || || ||||| |||||||||||||||||||| || || ||||||||||| ||| | | ||||| |||||||| |||| |
|
|
| T |
23597577 |
gccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaagaaaattg |
23597676 |
T |
|
| Q |
228 |
aggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaa |
327 |
Q |
| |
|
| || | ||||||| ||||| || ||| | |||| || || |||| |||||| ||||| |||||||||||||||||||| |||| || | ||||| |
|
|
| T |
23597677 |
aagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaa |
23597776 |
T |
|
| Q |
328 |
ccctatcattgccaagatgtgccaaggtg |
356 |
Q |
| |
|
|||||||||||| | ||||| ||||||| |
|
|
| T |
23597777 |
ccctatcattgcaaggatgtatcaaggtg |
23597805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 54395677 - 54395536
Alignment:
| Q |
50 |
aaggaagatattgaggagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaaggtcgaggccaagaatgcattggaaaatt |
149 |
Q |
| |
|
|||||||| || ||| ||||||| |||| ||||||||||| ||| | ||||||||||| |||||||| || ||||| |||||| || | || |||| |
|
|
| T |
54395677 |
aaggaagagatagagaagatggtgaaagatgcagagaagtataaggcagaggatgaagaggtgaagaagaaagtggaggcgaagaattcaattgagaatt |
54395578 |
T |
|
| Q |
150 |
atgcatacaacatgaggaacacaattaaggatgacaagattg |
191 |
Q |
| |
|
|||| || || |||||||| |||||||||||||| ||||||| |
|
|
| T |
54395577 |
atgcttataatatgaggaatacaattaaggatgagaagattg |
54395536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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