View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15605_low_1 (Length: 274)

Name: NF15605_low_1
Description: NF15605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15605_low_1
NF15605_low_1
[»] chr5 (15 HSPs)
chr5 (80-274)||(38144526-38144720)
chr5 (80-263)||(28370055-28370238)
chr5 (80-263)||(19512257-19512441)
chr5 (86-268)||(22751018-22751201)
chr5 (154-268)||(23528577-23528690)
chr5 (199-263)||(18407944-18408008)
chr5 (208-274)||(22438736-22438803)
chr5 (199-263)||(23111200-23111264)
chr5 (209-264)||(19236900-19236955)
chr5 (208-274)||(42961566-42961632)
chr5 (211-264)||(22461158-22461211)
chr5 (211-264)||(22467782-22467835)
chr5 (209-264)||(20781744-20781799)
chr5 (235-264)||(17021913-17021942)
chr5 (210-274)||(34830086-34830149)
[»] scaffold0026 (2 HSPs)
scaffold0026 (80-264)||(111557-111741)
scaffold0026 (86-274)||(11840-12029)
[»] chr8 (14 HSPs)
chr8 (80-264)||(44477494-44477678)
chr8 (80-264)||(44492652-44492836)
chr8 (80-261)||(8727735-8727917)
chr8 (86-274)||(23866491-23866680)
chr8 (154-274)||(17054537-17054656)
chr8 (80-274)||(27940841-27941038)
chr8 (199-263)||(23482053-23482117)
chr8 (207-263)||(18614271-18614327)
chr8 (208-274)||(14056553-14056619)
chr8 (207-263)||(39364919-39364975)
chr8 (208-274)||(25111976-25112042)
chr8 (209-263)||(29643386-29643440)
chr8 (209-264)||(24320670-24320725)
chr8 (207-263)||(21931696-21931752)
[»] chr3 (26 HSPs)
chr3 (80-263)||(9534199-9534382)
chr3 (80-264)||(23370505-23370690)
chr3 (86-263)||(14762758-14762936)
chr3 (86-261)||(20247791-20247967)
chr3 (84-261)||(24192830-24193009)
chr3 (86-261)||(38310802-38310978)
chr3 (83-274)||(16801457-16801648)
chr3 (182-274)||(41455087-41455178)
chr3 (154-264)||(24933828-24933937)
chr3 (82-261)||(55499104-55499285)
chr3 (202-263)||(18929239-18929300)
chr3 (199-263)||(17240513-17240577)
chr3 (209-264)||(13302240-13302295)
chr3 (209-264)||(13323787-13323842)
chr3 (209-264)||(12033444-12033499)
chr3 (209-264)||(13312896-13312951)
chr3 (209-264)||(17131732-17131787)
chr3 (209-264)||(51301589-51301644)
chr3 (154-264)||(10389443-10389553)
chr3 (154-264)||(10414532-10414642)
chr3 (154-264)||(10421202-10421312)
chr3 (209-264)||(14865846-14865901)
chr3 (229-264)||(23392819-23392854)
chr3 (207-261)||(16801027-16801081)
chr3 (228-264)||(2247649-2247685)
chr3 (213-269)||(10833303-10833359)
[»] chr2 (17 HSPs)
chr2 (80-263)||(6483589-6483772)
chr2 (80-263)||(6487056-6487239)
chr2 (83-263)||(19661454-19661634)
chr2 (83-274)||(26583702-26583892)
chr2 (80-263)||(23101463-23101647)
chr2 (80-261)||(23089057-23089239)
chr2 (80-261)||(23878879-23879060)
chr2 (154-264)||(5706023-5706133)
chr2 (199-263)||(23265133-23265197)
chr2 (199-263)||(23280201-23280265)
chr2 (202-263)||(21908353-21908414)
chr2 (207-263)||(24661576-24661632)
chr2 (209-264)||(10577-10632)
chr2 (209-264)||(25180929-25180984)
chr2 (209-273)||(26885183-26885246)
chr2 (211-274)||(23168288-23168351)
chr2 (211-274)||(23579545-23579608)
[»] chr7 (28 HSPs)
chr7 (83-267)||(14422858-14423043)
chr7 (80-263)||(16009448-16009631)
chr7 (86-268)||(18873237-18873420)
chr7 (86-259)||(10895795-10895969)
chr7 (86-263)||(15168052-15168230)
chr7 (86-274)||(12709833-12710022)
chr7 (86-274)||(13122904-13123093)
chr7 (84-274)||(13743584-13743774)
chr7 (87-274)||(12590633-12590818)
chr7 (83-261)||(16677167-16677348)
chr7 (83-261)||(17651403-17651584)
chr7 (154-274)||(13007378-13007497)
chr7 (208-274)||(21230949-21231015)
chr7 (208-263)||(11382871-11382926)
chr7 (208-263)||(11389348-11389403)
chr7 (208-274)||(20311039-20311107)
chr7 (200-263)||(13679485-13679548)
chr7 (209-264)||(2971254-2971309)
chr7 (209-264)||(20906461-20906516)
chr7 (209-263)||(11311059-11311113)
chr7 (228-269)||(831628-831669)
chr7 (228-269)||(1196808-1196849)
chr7 (228-269)||(34958578-34958619)
chr7 (207-263)||(46625961-46626017)
chr7 (209-264)||(29181109-29181164)
chr7 (208-274)||(148619-148685)
chr7 (211-264)||(31155396-31155449)
chr7 (212-264)||(16091078-16091130)
[»] scaffold0553 (1 HSPs)
scaffold0553 (80-264)||(10195-10380)
[»] scaffold0544 (1 HSPs)
scaffold0544 (80-264)||(1525-1710)
[»] chr6 (31 HSPs)
chr6 (80-263)||(23839069-23839253)
chr6 (80-274)||(10986170-10986365)
chr6 (83-263)||(4477731-4477912)
chr6 (86-274)||(29614136-29614325)
chr6 (83-274)||(18800311-18800503)
chr6 (86-263)||(23057815-23057993)
chr6 (130-274)||(930085-930229)
chr6 (154-274)||(12168309-12168428)
chr6 (154-274)||(19287218-19287337)
chr6 (154-274)||(19785859-19785978)
chr6 (154-274)||(19878402-19878521)
chr6 (154-274)||(19884178-19884297)
chr6 (80-261)||(21565214-21565396)
chr6 (181-264)||(34646660-34646743)
chr6 (181-264)||(34639986-34640069)
chr6 (158-264)||(25469704-25469808)
chr6 (208-274)||(24512833-24512899)
chr6 (211-263)||(9187498-9187550)
chr6 (207-263)||(25348486-25348542)
chr6 (207-261)||(25598643-25598697)
chr6 (207-263)||(25397172-25397228)
chr6 (199-264)||(31252413-31252478)
chr6 (207-263)||(19471335-19471391)
chr6 (207-261)||(2286769-2286823)
chr6 (175-264)||(11288668-11288758)
chr6 (229-263)||(18659450-18659484)
chr6 (229-263)||(24441673-24441707)
chr6 (211-264)||(15458492-15458545)
chr6 (211-264)||(15465087-15465140)
chr6 (236-264)||(28288509-28288537)
chr6 (229-269)||(29415551-29415591)
[»] chr1 (16 HSPs)
chr1 (80-263)||(20437024-20437208)
chr1 (154-274)||(41111981-41112100)
chr1 (199-263)||(32651563-32651627)
chr1 (199-263)||(18712790-18712854)
chr1 (208-263)||(19663517-19663572)
chr1 (207-263)||(20805320-20805376)
chr1 (208-263)||(11158093-11158148)
chr1 (207-261)||(10811785-10811839)
chr1 (209-264)||(20851132-20851187)
chr1 (209-264)||(20857759-20857814)
chr1 (209-264)||(21706276-21706331)
chr1 (209-264)||(21710818-21710873)
chr1 (233-263)||(24476350-24476380)
chr1 (233-263)||(25091418-25091448)
chr1 (229-262)||(18271338-18271371)
chr1 (229-262)||(18275992-18276025)
[»] scaffold0029 (1 HSPs)
scaffold0029 (86-274)||(111758-111948)
[»] scaffold1773 (1 HSPs)
scaffold1773 (86-271)||(1055-1240)
[»] scaffold0006 (1 HSPs)
scaffold0006 (86-271)||(50056-50241)
[»] scaffold0247 (1 HSPs)
scaffold0247 (80-274)||(11212-11407)
[»] scaffold0924 (1 HSPs)
scaffold0924 (86-274)||(740-930)
[»] scaffold0058 (1 HSPs)
scaffold0058 (84-274)||(167-356)
[»] scaffold0117 (2 HSPs)
scaffold0117 (87-274)||(8564-8751)
scaffold0117 (87-274)||(1887-2074)
[»] scaffold0025 (1 HSPs)
scaffold0025 (84-261)||(14398-14577)
[»] chr4 (16 HSPs)
chr4 (87-274)||(8045822-8046009)
chr4 (86-274)||(11847984-11848179)
chr4 (154-264)||(53483650-53483760)
chr4 (208-274)||(15408139-15408205)
chr4 (207-263)||(8834895-8834951)
chr4 (207-263)||(13888641-13888697)
chr4 (209-261)||(14486661-14486713)
chr4 (207-263)||(15245215-15245271)
chr4 (207-258)||(22724691-22724742)
chr4 (228-269)||(15747551-15747592)
chr4 (207-263)||(15308120-15308176)
chr4 (209-264)||(16146830-16146885)
chr4 (209-264)||(27906266-27906321)
chr4 (233-263)||(15069781-15069811)
chr4 (233-263)||(15076381-15076411)
chr4 (207-264)||(14912081-14912138)
[»] scaffold0154 (1 HSPs)
scaffold0154 (83-274)||(30730-30923)
[»] scaffold0090 (1 HSPs)
scaffold0090 (84-274)||(18043-18235)
[»] scaffold0476 (1 HSPs)
scaffold0476 (80-261)||(3295-3478)
[»] scaffold0077 (1 HSPs)
scaffold0077 (80-261)||(3624-3806)
[»] scaffold0796 (2 HSPs)
scaffold0796 (154-269)||(1727-1841)
scaffold0796 (154-269)||(5750-5864)
[»] scaffold0456 (2 HSPs)
scaffold0456 (181-268)||(904-991)
scaffold0456 (181-268)||(8049-8136)
[»] scaffold0129 (1 HSPs)
scaffold0129 (154-270)||(45268-45384)
[»] scaffold0107 (1 HSPs)
scaffold0107 (208-274)||(40521-40587)
[»] scaffold0222 (1 HSPs)
scaffold0222 (199-263)||(16811-16875)
[»] scaffold0004 (2 HSPs)
scaffold0004 (199-263)||(116887-116951)
scaffold0004 (229-262)||(60441-60474)
[»] scaffold0310 (1 HSPs)
scaffold0310 (208-274)||(17643-17710)
[»] scaffold0019 (1 HSPs)
scaffold0019 (208-274)||(135473-135539)
[»] scaffold0461 (1 HSPs)
scaffold0461 (199-263)||(8-72)
[»] scaffold0235 (1 HSPs)
scaffold0235 (210-274)||(22582-22646)
[»] scaffold0146 (1 HSPs)
scaffold0146 (199-263)||(13623-13687)
[»] scaffold0020 (1 HSPs)
scaffold0020 (199-263)||(101928-101992)
[»] scaffold0124 (2 HSPs)
scaffold0124 (208-263)||(34276-34331)
scaffold0124 (207-264)||(35438-35495)
[»] scaffold0815 (1 HSPs)
scaffold0815 (212-274)||(1453-1515)
[»] scaffold2054 (1 HSPs)
scaffold2054 (175-274)||(680-780)
[»] scaffold0138 (1 HSPs)
scaffold0138 (207-263)||(12296-12352)
[»] scaffold0317 (1 HSPs)
scaffold0317 (200-263)||(1378-1441)
[»] scaffold0139 (1 HSPs)
scaffold0139 (208-263)||(14997-15052)
[»] scaffold0096 (1 HSPs)
scaffold0096 (207-267)||(39503-39563)
[»] scaffold0001 (1 HSPs)
scaffold0001 (209-273)||(493019-493082)
[»] scaffold0790 (1 HSPs)
scaffold0790 (235-274)||(5480-5519)
[»] scaffold0348 (1 HSPs)
scaffold0348 (209-264)||(9336-9391)
[»] scaffold0127 (1 HSPs)
scaffold0127 (209-264)||(10239-10294)
[»] scaffold0023 (1 HSPs)
scaffold0023 (209-264)||(135438-135493)
[»] scaffold1318 (1 HSPs)
scaffold1318 (209-263)||(1913-1967)
[»] scaffold0609 (1 HSPs)
scaffold0609 (199-264)||(5857-5922)
[»] scaffold0261 (1 HSPs)
scaffold0261 (209-274)||(23559-23624)
[»] scaffold0335 (1 HSPs)
scaffold0335 (207-263)||(2628-2684)
[»] scaffold0053 (1 HSPs)
scaffold0053 (209-264)||(79490-79545)
[»] scaffold0481 (1 HSPs)
scaffold0481 (217-262)||(676-721)
[»] scaffold0249 (1 HSPs)
scaffold0249 (211-264)||(13894-13947)
[»] scaffold0600 (1 HSPs)
scaffold0600 (207-263)||(732-788)
[»] scaffold0180 (1 HSPs)
scaffold0180 (214-263)||(11630-11681)
[»] scaffold0034 (1 HSPs)
scaffold0034 (209-261)||(73285-73337)
[»] scaffold0031 (2 HSPs)
scaffold0031 (207-263)||(121902-121958)
scaffold0031 (207-263)||(132778-132834)
[»] scaffold0028 (1 HSPs)
scaffold0028 (211-263)||(69749-69801)


Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 80 - 274
Target Start/End: Complemental strand, 38144720 - 38144526
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  38144720 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaa 38144621  T
Q  180 tttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38144620 tttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 38144526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 80 - 263
Target Start/End: Complemental strand, 28370238 - 28370055
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  28370238 cagtatagattaagttttcattctaaacattacgttacaacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaa 28370139  T
Q  180 tttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28370138 tttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 80 - 263
Target Start/End: Original strand, 19512257 - 19512441
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  19512257 cagtatagattaagttttcattctaaacattacgttacaatagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaa 19512356  T
Q  180 tttattttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19512357 tttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 86 - 268
Target Start/End: Original strand, 22751018 - 22751201
Alignment:
Q  86 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 184  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||  |||| || |||||||||||||||||||||||||||||||    
T  22751018 agattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttat 22751117  T
Q  185 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 268  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  22751118 cttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 22751201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 154 - 268
Target Start/End: Original strand, 23528577 - 23528690
Alignment:
Q  154 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 253  Q
    ||||||||||||||||||||  |||  ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23528577 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 23528675  T
Q  254 ccttaccttagtttt 268  Q
    |||||||||||||||    
T  23528676 ccttaccttagtttt 23528690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 18408008 - 18407944
Alignment:
Q  199 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18408008 caattagatcaattttcagaaattatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 22438803 - 22438736
Alignment:
Q  208 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttag-ttttgcagaa 274  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22438803 caattttcagaaattatacattatgattattgagagatagtctcacccttaccttagattttgcagaa 22438736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 23111264 - 23111200
Alignment:
Q  199 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  23111264 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23111200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 19236900 - 19236955
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  19236900 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 19236955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 42961566 - 42961632
Alignment:
Q  208 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||||||| ||| ||||| || |||||  | ||| ||||||||||||||||||||||||||    
T  42961566 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaa 42961632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 22461158 - 22461211
Alignment:
Q  211 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  22461158 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 22467782 - 22467835
Alignment:
Q  211 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  22467782 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 20781744 - 20781799
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||| ||| ||||| |||||||| ||||| || ||||||||||||||    
T  20781744 aattttcagaaatcatatattataattattgaaagataatcccacccttaccttag 20781799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 235 - 264
Target Start/End: Complemental strand, 17021942 - 17021913
Alignment:
Q  235 tattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||||||||||||||||||    
T  17021942 tattgagagatagtctcacccttaccttag 17021913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 34830086 - 34830149
Alignment:
Q  210 attttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||||||||| ||||  |||||||| ||||| || ||||||||||||||  ||||||||    
T  34830086 attttcagaaattatacattaa-attattgaaagataatcccacccttaccttagaattgcagaa 34830149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 80 - 264
Target Start/End: Original strand, 111557 - 111741
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  111557 cagtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaa 111656  T
Q  180 tttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  111657 tttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 111741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 86 - 274
Target Start/End: Complemental strand, 12029 - 11840
Alignment:
Q  86 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 184  Q
    |||||||||||||||||| || |||| ||||||| |||||||||||||||| |||||||  |||| || |||||||||||||||||||| ||||||||||    
T  12029 agattaagttttcattctgaagattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaactctcaatttat 11930  T
Q  185 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11929 tttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 11840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 80 - 264
Target Start/End: Original strand, 44477494 - 44477678
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  44477494 cagtatagattaagttttcattctaaacattacgttacaacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaa 44477593  T
Q  180 tttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44477594 tttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44477678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 80 - 264
Target Start/End: Original strand, 44492652 - 44492836
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  44492652 cagtatagattaagttttcattctaaacattacgttacaacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaa 44492751  T
Q  180 tttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44492752 tttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44492836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 80 - 261
Target Start/End: Complemental strand, 8727917 - 8727735
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  8727917 cagtatagattaagttttcattctgaacattacattacaacagaattaacatgatcaatacccatacccctcagaatcatcgtcaaaccctaaccctcaa 8727818  T
Q  180 tttattttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 261  Q
    ||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  8727817 tttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagggataatctcacccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 86 - 274
Target Start/End: Original strand, 23866491 - 23866680
Alignment:
Q  86 agattaagttttcattctaaacattacattacaa-tagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaattta 183  Q
    |||||||||||  ||||| ||||||| ||||||| ||||||||||||||||| |||||||  | || |||||||||||||||||||||||||||||||||    
T  23866491 agattaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaattta 23866590  T
Q  184 ttttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23866591 ttttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 23866680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 154 - 274
Target Start/End: Original strand, 17054537 - 17054656
Alignment:
Q  154 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 253  Q
    ||||||||||||||||||||  |||  ||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  17054537 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcac 17054635  T
Q  254 ccttaccttagttttgcagaa 274  Q
    ||||||||| |||||||||||    
T  17054636 ccttaccttggttttgcagaa 17054656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 274
Target Start/End: Complemental strand, 27941038 - 27940841
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    ||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||  | |||    
T  27941038 cagtatagattaaattttcattctgaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaattcccaa 27940939  T
Q  180 t--ttattttccaa-aattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |  ||||||| ||| ||  || | | |    |||||||||||||| ||| ||||| || |||||  | ||| ||||||||||||||||||||||||||    
T  27940938 ttcttatttttcaagaacaattctaatcaaacaattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaa 27940841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 23482117 - 23482053
Alignment:
Q  199 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  23482117 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23482053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 18614271 - 18614327
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  18614271 tcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 14056619 - 14056553
Alignment:
Q  208 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||||| ||| | | ||| |||||||||||||||||||||||||||||||| |||||||||    
T  14056619 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgcagaa 14056553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 39364919 - 39364975
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||||||||||||    
T  39364919 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 39364975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 25111976 - 25112042
Alignment:
Q  208 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||||| ||| | | ||| |||||||||||||||||||||||||||||||| |||| ||||    
T  25111976 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgtagaa 25112042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 29643440 - 29643386
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||||||||| | |||||||||||||| ||||| ||||||||||||||||    
T  29643440 aattttcagaaattacatattatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 24320725 - 24320670
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  24320725 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 24320670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 21931696 - 21931752
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||||||| ||||| ||||| || |||||||| ||| |||||||||||||||    
T  21931696 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 21931752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 80 - 263
Target Start/End: Original strand, 9534199 - 9534382
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||    
T  9534199 cagtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattccactcagaatcatcatcaaaccctaaccctcaa 9534298  T
Q  180 tttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9534299 tttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 80 - 264
Target Start/End: Complemental strand, 23370690 - 23370505
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||    
T  23370690 cagtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaa 23370591  T
Q  180 tttattttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23370590 tttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 23370505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 86 - 263
Target Start/End: Complemental strand, 14762936 - 14762758
Alignment:
Q  86 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 184  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||  |||| || |||||||||||||||||||||||||||||||    
T  14762936 agattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttat 14762837  T
Q  185 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14762836 cttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 14762758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 86 - 261
Target Start/End: Complemental strand, 20247967 - 20247791
Alignment:
Q  86 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 184  Q
    |||||||||||||||||| ||||||| ||||||| | |||||||||||||| |||||||  |||| || |||||||||||||||||||||||||||||||    
T  20247967 agattaagttttcattctgaacattatattacaagaaaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttat 20247868  T
Q  185 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 261  Q
     |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20247867 cttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 84 - 261
Target Start/End: Original strand, 24192830 - 24193009
Alignment:
Q  84 atagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaattt 182  Q
    |||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||||||  |||| || |||||||||||||||||||||||||||||    
T  24192830 atagattaagttttcattctgaacatcacattacaacagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaattt 24192929  T
Q  183 attttccaaaat-tatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 261  Q
    || ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24192930 atcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 86 - 261
Target Start/End: Complemental strand, 38310978 - 38310802
Alignment:
Q  86 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 184  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||  |||| || |||||||||||||||||||||||||||||||    
T  38310978 agattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttat 38310879  T
Q  185 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 261  Q
     |||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38310878 cttccaaaactatgcaattaggtcaatattcagaaattatagattatgattatcgagagatagtctcacccttacct 38310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 83 - 274
Target Start/End: Complemental strand, 16801648 - 16801457
Alignment:
Q  83 tatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatac-ccatacccctcataatcatcatcaaaccctaaccctcaatt 181  Q
    ||||| |||||  |||||||||||||| ||||||||  | | |||||||||||| ||| |||| | ||||| |||||||||||| |||||||| ||||||    
T  16801648 tataggttaagaattcattctaaacatcacattacagcatatttaacatgatcattacaccattctcctcaaaatcatcatcaa-ccctaaccttcaatt 16801550  T
Q  182 t-attttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    | || ||| |||  || ||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  16801549 ttatcttcaaaagctaagcaatcaggtcaattttcagaaattatatat-atgattattgagagatagtctcacccttaccttagttttgcagaa 16801457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 182 - 274
Target Start/End: Complemental strand, 41455178 - 41455087
Alignment:
Q  182 tattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41455178 tattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 41455087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 24933937 - 24933828
Alignment:
Q  154 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 253  Q
    |||||||||||||||||||   |||  ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24933937 aatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 24933839  T
Q  254 ccttaccttag 264  Q
    |||||||||||    
T  24933838 ccttaccttag 24933828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 82 - 261
Target Start/End: Complemental strand, 55499285 - 55499104
Alignment:
Q  82 gtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaatt 181  Q
    |||||||||||| ||||||||  ||||| ||||||||| | |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||    
T  55499285 gtatagattaagatttcattccgaacatcacattacaacataattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaatt 55499186  T
Q  182 tattttccaaaattatgcaattaggtcaatttt-cagaaattatagattat-gattattgagagatagtctcacccttacct 261  Q
    |  |   |||  ||| ||| ||||||||||||| | ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  55499185 ttatcctcaaggttaagcagttaggtcaattttcccgaaattacatattatctattaatgagagatagtctcacccttacct 55499104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 18929239 - 18929300
Alignment:
Q  202 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  18929239 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 17240577 - 17240513
Alignment:
Q  199 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  17240577 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 17240513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 13302295 - 13302240
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13302240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 13323842 - 13323787
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13323787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 12033499 - 12033444
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  12033499 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 12033444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 13312951 - 13312896
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    |||||||| |||||| | |||||||||||||| ||||| |||||||||||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttaccttag 13312896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 17131732 - 17131787
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  17131732 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 17131787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 51301589 - 51301644
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||| | |||||||||||||  ||||| |||||||||||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 51301644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 10389553 - 10389443
Alignment:
Q  154 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 253  Q
    |||||||||||||||||||   |||  ||||| |  |||| ||| ||||||| | | ||||||||||||||| ||||| || ||||| ||||| || |||    
T  10389553 aatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccac 10389454  T
Q  254 ccttaccttag 264  Q
    |||||||||||    
T  10389453 ccttaccttag 10389443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 10414642 - 10414532
Alignment:
Q  154 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 253  Q
    |||||||||||||||||||   |||  ||||| |  |||| ||| ||||||| | | ||||||||||||||| ||||| || ||||| ||||| || |||    
T  10414642 aatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccac 10414543  T
Q  254 ccttaccttag 264  Q
    |||||||||||    
T  10414542 ccttaccttag 10414532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 10421312 - 10421202
Alignment:
Q  154 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 253  Q
    |||||||||||||||||||   |||  ||||| |  |||| ||| ||||||| | | ||||||||||||||| ||||| || ||||| ||||| || |||    
T  10421312 aatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccac 10421213  T
Q  254 ccttaccttag 264  Q
    |||||||||||    
T  10421212 ccttaccttag 10421202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 14865846 - 14865901
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  14865846 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 14865901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 23392854 - 23392819
Alignment:
Q  229 tatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||| ||||||||||||||||||||    
T  23392854 tatgattattgagagttagtctcacccttaccttag 23392819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 16801027 - 16801081
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 261  Q
    ||||||||||||| ||||| ||||  || |||||||| |||||||||||||||||    
T  16801027 tcaattttcagaagttatatattacaatcattgagagttagtctcacccttacct 16801081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 2247685 - 2247649
Alignment:
Q  228 ttatgattattgagagatagtctcacccttaccttag 264  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  2247685 ttataattattgagagttagtctcacccttaccttag 2247649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 10833359 - 10833303
Alignment:
Q  213 ttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 269  Q
    ||||||| ||||| | |||||||| |||  | |||||||||||||||||||||||||    
T  10833359 ttcagaatttatacactatgattactgaatgttagtctcacccttaccttagttttg 10833303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 80 - 263
Target Start/End: Original strand, 6483589 - 6483772
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  6483589 cagtatagattaagttttcattctaaacattacgttacaacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaa 6483688  T
Q  180 tttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6483689 tttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6483772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 80 - 263
Target Start/End: Original strand, 6487056 - 6487239
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  6487056 cagtatagattaagttttcattctaaacattacgttacaacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaa 6487155  T
Q  180 tttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6487156 tttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6487239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 83 - 263
Target Start/End: Complemental strand, 19661634 - 19661454
Alignment:
Q  83 tatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaattt 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  19661634 tatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaattt 19661535  T
Q  183 attttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  19661534 atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttacctta 19661454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 83 - 274
Target Start/End: Original strand, 26583702 - 26583892
Alignment:
Q  83 tatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaattt 182  Q
    ||||||||| |  |||||||| ||||| || |||||| | | |||||||||||| ||||| | ||||||| |||||||||||| ||||||||||||||||    
T  26583702 tatagattaggaattcattctgaacatcactttacaacatatttaacatgatcattaccctttcccctcagaatcatcatcaagccctaaccctcaattt 26583801  T
Q  183 attttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26583802 attttccaaaactatgcaattaggtcaa-tttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 26583892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 80 - 263
Target Start/End: Complemental strand, 23101647 - 23101463
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    |||||||||||||| ||||||||  ||| | ||||||||| | |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  23101647 cagtatagattaagatttcattccgaacgtcacattacaacataattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaa 23101548  T
Q  180 tttattttccaaaattatgcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacctta 263  Q
    |||  |   |||  |||  ||||||||||||||||| ||||||| | |||||  |||| ||||||||||||||||||||||||||    
T  23101547 ttttatcctcaaggttaaacaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacctta 23101463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 80 - 261
Target Start/End: Complemental strand, 23089239 - 23089057
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    |||||||||||||| ||||||||  ||| | ||||||||| | |||||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||    
T  23089239 cagtatagattaagatttcattccgaacgtcacattacaacataattaacatgatcattacccattccccttagaatcatcatcaaaccctaaccctcaa 23089140  T
Q  180 tttattttccaaaattatgcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacct 261  Q
    |||  |   |||  ||| |||||||||||||||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  23089139 ttttatcctcaaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctcacccttacct 23089057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 80 - 261
Target Start/End: Original strand, 23878879 - 23879060
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaataccc-atacccctcataatcatcatcaaaccctaaccctca 178  Q
    |||||||||||||| ||||||||| ||||| ||||||||| | |||||||||||||| ||||| || ||||||| |||||||| ||| ||||||||||||    
T  23878879 cagtatagattaagatttcattctgaacatcacattacaacataattaacatgatcattaccccattcccctcagaatcatcaacaa-ccctaaccctca 23878977  T
Q  179 atttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 261  Q
    ||||| |   |||  ||| |||||||||||||||||  ||||||||| || || |||| ||||||||||||||||||||||||    
T  23878978 atttaatcctcaaggttaagcaattaggtcaatttttcgaaattatatataattattaatgagagatagtctcacccttacct 23879060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 5706133 - 5706023
Alignment:
Q  154 aatcatcatcaaaccctaaccctca-atttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctca 252  Q
    |||||||||||||||||||   ||| |||  ||||| |||| ||| |||||||||||| |||||| |||||||||||||||||| |||||||||||||||    
T  5706133 aatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattaatgagagatagtctca 5706035  T
Q  253 cccttaccttag 264  Q
    ||||||||||||    
T  5706034 cccttaccttag 5706023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 23265133 - 23265197
Alignment:
Q  199 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  23265133 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 23280201 - 23280265
Alignment:
Q  199 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  23280201 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 21908353 - 21908414
Alignment:
Q  202 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  21908353 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 24661576 - 24661632
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 24661632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 10577 - 10632
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  10577 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 10632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 25180984 - 25180929
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  25180984 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 25180929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 26885183 - 26885246
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcaga 273  Q
    ||||||||||||||||| |||| ||||||||| ||||| || ||||||||||||||  |||||||    
T  26885183 aattttcagaaattatacatta-gattattgaaagataatcccacccttaccttagaattgcaga 26885246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 23168351 - 23168288
Alignment:
Q  211 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    ||||||||||||||| |||||||| | ||| ||||| || ||||||||||||||  ||||||||    
T  23168351 ttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttagaattgcagaa 23168288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 23579608 - 23579545
Alignment:
Q  211 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    ||||||||||||||| |||||||| | ||| ||||| || ||||||||||||||  ||||||||    
T  23579608 ttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttagaattgcagaa 23579545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 83 - 267
Target Start/End: Original strand, 14422858 - 14423043
Alignment:
Q  83 tatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaattt 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  14422858 tatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaattt 14422957  T
Q  183 attttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttt 267  Q
    || |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14422958 atcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttt 14423043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 80 - 263
Target Start/End: Original strand, 16009448 - 16009631
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| |||||| |||    
T  16009448 cagtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccttaacccacaa 16009547  T
Q  180 tttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16009548 tttatcttccaaaaccatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 86 - 268
Target Start/End: Original strand, 18873237 - 18873420
Alignment:
Q  86 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 184  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||  |||| || |||||||||||||||||||||||||||||||    
T  18873237 agattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttat 18873336  T
Q  185 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 268  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  18873337 cttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 18873420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 86 - 259
Target Start/End: Complemental strand, 10895969 - 10895795
Alignment:
Q  86 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaatttatt 185  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||     
T  10895969 agattaagttttcattctgaacattatattacaagagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaatttatc 10895870  T
Q  186 ttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 259  Q
    |||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10895869 ttccaaaaactatgcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 86 - 263
Target Start/End: Original strand, 15168052 - 15168230
Alignment:
Q  86 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 184  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||  |||| || |||||||||||||||||||||||||||||||    
T  15168052 agattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttat 15168151  T
Q  185 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15168152 cttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 15168230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 86 - 274
Target Start/End: Complemental strand, 12710022 - 12709833
Alignment:
Q  86 agattaagttttcattctaaacattacattacaa-tagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaattta 183  Q
    |||||||||||  ||||| ||||||| ||||||| ||||||||||||||||| |||||||  | || |||||||||||||||||||||||||||||||||    
T  12710022 agattaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaattta 12709923  T
Q  184 ttttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12709922 ttttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 12709833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 86 - 274
Target Start/End: Complemental strand, 13123093 - 13122904
Alignment:
Q  86 agattaagttttcattctaaacattacattacaa-tagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaattta 183  Q
    |||||||||||  ||||| ||||||| ||||||| ||||||||||||||||| |||||||  | || |||||||||||||||||||||||||||||||||    
T  13123093 agattaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaattta 13122994  T
Q  184 ttttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13122993 ttttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 13122904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 84 - 274
Target Start/End: Original strand, 13743584 - 13743774
Alignment:
Q  84 atagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaattt 182  Q
    ||||||||||| |||| ||| ||||  | | ||||| | |||||||||||||| |||||||  | || ||||||||||||||||||||||||||||||||    
T  13743584 atagattaagtcttcaatctgaacagcataatacaagaaaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaattt 13743683  T
Q  183 attttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    ||||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13743684 attttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 13743774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 87 - 274
Target Start/End: Complemental strand, 12590818 - 12590633
Alignment:
Q  87 gattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaatttattt 186  Q
    ||||||| ||||||||| ||||||| ||| ||| | || |||||| |||  ||| ||| ||  ||| ||||||||||||||||||||  |||  ||||||    
T  12590818 gattaagctttcattcttaacattaaattccaagaaaactaacatcatctttactcattcca-tcagaatcatcatcaaaccctaactttcatattattt 12590720  T
Q  187 tccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12590719 tccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 12590633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 83 - 261
Target Start/End: Original strand, 16677167 - 16677348
Alignment:
Q  83 tatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatac-ccatacccctcataatcatcatcaaaccctaaccctcaatt 181  Q
    ||||||||| |  |||||||| ||||| || |||||| | | |||||||||||| ||| |||| | ||||| ||||||||||||||||||||||| ||||    
T  16677167 tatagattaggaattcattctgaacatcactttacaacatatttaacatgatcattacaccatcctcctcaaaatcatcatcaaaccctaacccttaatt 16677266  T
Q  182 t-attttccaaaat-tatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 261  Q
    | || ||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16677267 ttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacct 16677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 83 - 261
Target Start/End: Original strand, 17651403 - 17651584
Alignment:
Q  83 tatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatac-ccatacccctcataatcatcatcaaaccctaaccctcaatt 181  Q
    ||||||||| |  |||||||| ||||| || |||||| | | |||||||||||| ||| |||| | ||||| ||||||||||||||||||||||| ||||    
T  17651403 tatagattaggaattcattctgaacatcactttacaacatatttaacatgatcattacaccatcctcctcaaaatcatcatcaaaccctaacccttaatt 17651502  T
Q  182 t-attttccaaaat-tatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 261  Q
    | || ||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17651503 ttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacct 17651584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 154 - 274
Target Start/End: Original strand, 13007378 - 13007497
Alignment:
Q  154 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 253  Q
    ||||||||||||||||||||  |||  ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13007378 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 13007476  T
Q  254 ccttaccttagttttgcagaa 274  Q
    |||||||||||||||||||||    
T  13007477 ccttaccttagttttgcagaa 13007497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 21231015 - 21230949
Alignment:
Q  208 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||    
T  21231015 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaa 21230949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 11382926 - 11382871
Alignment:
Q  208 caattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11382926 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 11389403 - 11389348
Alignment:
Q  208 caattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11389403 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 20311107 - 20311039
Alignment:
Q  208 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttag--ttttgcagaa 274  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  20311107 caattttcagaaattatacgttatgattattgagagatagtctcacccttaccttagatttttgcagaa 20311039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 13679485 - 13679548
Alignment:
Q  200 aattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    |||||| |||||||||| |||||||| || ||||| ||||| ||||||||||||||||||||||    
T  13679485 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 2971254 - 2971309
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  2971254 aattttcagaaattataaattatgactattgaaagataatcccacccttaccttag 2971309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 20906516 - 20906461
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  20906516 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20906461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 11311059 - 11311113
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    |||||| ||||||| || | ||| |||||||||||||||||||||||||||||||    
T  11311059 aatttttagaaattctacactattattattgagagatagtctcacccttacctta 11311113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 831669 - 831628
Alignment:
Q  228 ttatgattattgagagatagtctcacccttaccttagttttg 269  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  831669 ttataattattgagagttagtctcacccttaccttagttttg 831628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 1196849 - 1196808
Alignment:
Q  228 ttatgattattgagagatagtctcacccttaccttagttttg 269  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  1196849 ttataattattgagagttagtctcacccttaccttagttttg 1196808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 34958578 - 34958619
Alignment:
Q  228 ttatgattattgagagatagtctcacccttaccttagttttg 269  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  34958578 ttataattattgagagttagtctcacccttaccttagttttg 34958619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 46625961 - 46626017
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||| ||||||||| ||||| || |||||||| |||||||||||||| ||||    
T  46625961 tcaattttccgaaattatatattataatcattgagagttagtctcacccttatctta 46626017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 29181164 - 29181109
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  29181164 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 29181109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 148619 - 148685
Alignment:
Q  208 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||||||  ||| ||||| || |||||  | ||| ||||||||||||||||||||||||||    
T  148619 caattttcagaaaccatatattataatcattgaaggttagcctcacccttaccttagttttgcagaa 148685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 31155396 - 31155449
Alignment:
Q  211 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||| ||||| || ||||| ||||| || ||||||||||||||    
T  31155396 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttag 31155449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 16091078 - 16091130
Alignment:
Q  212 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  16091078 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 16091130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 80 - 264
Target Start/End: Complemental strand, 10380 - 10195
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||    
T  10380 cagtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaa 10281  T
Q  180 tttattttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10280 tttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 10195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 80 - 264
Target Start/End: Complemental strand, 1710 - 1525
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||    
T  1710 cagtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaa 1611  T
Q  180 tttattttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1610 tttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 9e-79; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 80 - 263
Target Start/End: Original strand, 23839069 - 23839253
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||    
T  23839069 cagtatagattaagttttcattctgaacattacattacaacagaattaacatgatcaatacccattccccttagaatcatcatcaaaccctaaccctcaa 23839168  T
Q  180 tttattttccaaa-attatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23839169 tttatcttccaaacactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 23839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 80 - 274
Target Start/End: Complemental strand, 10986365 - 10986170
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  10986365 cagtatagattaagttttcattctgaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaa 10986266  T
Q  180 tttattttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    ||||| |||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||    
T  10986265 tttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgaaagatagtctcacccttaccttagaattgcagaa 10986170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 83 - 263
Target Start/End: Original strand, 4477731 - 4477912
Alignment:
Q  83 tatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaattt 182  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  4477731 tatagattaagttttcattctaaacattacattacaacagaattagcatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaattt 4477830  T
Q  183 attttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    || |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4477831 atcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 86 - 274
Target Start/End: Complemental strand, 29614325 - 29614136
Alignment:
Q  86 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 184  Q
    ||||||||||||||||||||||||| || ||||| |||||||||||||||| |||||||  |||| ||||||||||||||||||||||||||||||||||    
T  29614325 agattaagttttcattctaaacatt-caatacaagagaattaacatgatcattacccatttcccttcataatcatcatcaaaccctaaccctcaatttat 29614227  T
Q  185 ttt-ccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29614226 ttttccaaaattatgcaactaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 29614136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 83 - 274
Target Start/End: Original strand, 18800311 - 18800503
Alignment:
Q  83 tatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaatt- 181  Q
    ||||||||||| ||||||| | ||||| ||||||||| |||||||||||||||| ||| ||| |||  || ||||||||||||||||||||||||||||     
T  18800311 tatagattaagatttcattttgaacatcacattacaacagaattaacatgatcattactcattccctccagaatcatcatcaaaccctaaccctcaattc 18800410  T
Q  182 tattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18800411 tattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacattagttttgcagaa 18800503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 86 - 263
Target Start/End: Original strand, 23057815 - 23057993
Alignment:
Q  86 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 184  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||  |||| || |||||||||||||||||||||||||||||||    
T  23057815 agattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttat 23057914  T
Q  185 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
     |||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  23057915 cttccaaaactatgcaattaggtcaattttcaggaattatagattatgattatcgagagatagtctcacccttacctta 23057993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 130 - 274
Target Start/End: Complemental strand, 930229 - 930085
Alignment:
Q  130 atgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagatt 229  Q
    ||||||| ||||||| ||| ||| || ||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||||    
T  930229 atgatcattacccattcccttcagaaacatcatcaaaccctaaccctcaatttatttttcaaaactatacaattaggtcaattttcagaaactatagatt 930130  T
Q  230 atgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  930129 atgattattgagagatagtctcacccttaccttagttttgcagaa 930085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 154 - 274
Target Start/End: Original strand, 12168309 - 12168428
Alignment:
Q  154 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 253  Q
    ||||||||||||||||||||  |||  ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12168309 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 12168407  T
Q  254 ccttaccttagttttgcagaa 274  Q
    |||||||||||||||||||||    
T  12168408 ccttaccttagttttgcagaa 12168428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 154 - 274
Target Start/End: Original strand, 19287218 - 19287337
Alignment:
Q  154 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 253  Q
    ||||||||||||||||||||  |||  ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19287218 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 19287316  T
Q  254 ccttaccttagttttgcagaa 274  Q
    |||||||||||||||||||||    
T  19287317 ccttaccttagttttgcagaa 19287337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 154 - 274
Target Start/End: Complemental strand, 19785978 - 19785859
Alignment:
Q  154 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 253  Q
    ||||||||||||||||||||  ||| |||||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19785978 aatcatcatcaaaccctaactttcattttattttccaaaactattcaactaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 19785880  T
Q  254 ccttaccttagttttgcagaa 274  Q
    |||||||||||||||||||||    
T  19785879 ccttaccttagttttgcagaa 19785859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 154 - 274
Target Start/End: Original strand, 19878402 - 19878521
Alignment:
Q  154 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 253  Q
    ||||||||||||||||||||  |||  ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19878402 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 19878500  T
Q  254 ccttaccttagttttgcagaa 274  Q
    |||||||||||||||||||||    
T  19878501 ccttaccttagttttgcagaa 19878521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 154 - 274
Target Start/End: Original strand, 19884178 - 19884297
Alignment:
Q  154 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 253  Q
    ||||||||||||||||||||  |||  ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19884178 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 19884276  T
Q  254 ccttaccttagttttgcagaa 274  Q
    ||| |||||||||||||||||    
T  19884277 cctaaccttagttttgcagaa 19884297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 80 - 261
Target Start/End: Complemental strand, 21565396 - 21565214
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    |||||||||||||| ||||||||  ||| | ||||||||| | |||||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||    
T  21565396 cagtatagattaagatttcattccgaacgtcacattacaacataattaacatgatcattacccattccccttagaatcatcatcaaaccctaaccctcaa 21565297  T
Q  180 tttattttccaaaattatgcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacct 261  Q
    |||  |   |||  ||| |||||||||||||||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  21565296 ttttatcctcaaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctcacccttacct 21565214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 34646743 - 34646660
Alignment:
Q  181 ttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34646743 ttattttccaaaattattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 34640069 - 34639986
Alignment:
Q  181 ttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34640069 ttattttccaaaactattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34639986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 158 - 264
Target Start/End: Complemental strand, 25469808 - 25469704
Alignment:
Q  158 atcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccctt 257  Q
    |||||||||||||||   |||  |||||||||||||  || ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  25469808 atcatcaaaccctaattttcatattattttccaaaaccattcaattaggtcaattt-cagaa-ttatagattatgattattgagagatagtctcaccctt 25469711  T
Q  258 accttag 264  Q
    |||||||    
T  25469710 accttag 25469704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 24512899 - 24512833
Alignment:
Q  208 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| |||||||||    
T  24512899 caattttcagaaattatatactatgattattgagagatagtctcaccctcaccttagatttgcagaa 24512833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 9187498 - 9187550
Alignment:
Q  211 ttttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  9187498 ttttcagaaattatgtattaagattattgagagatagtctcacccttacctta 9187550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 25348486 - 25348542
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||||||||||||    
T  25348486 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 25348542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 25598643 - 25598697
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 261  Q
    |||||||||||||| |||| |||||||| |||||||| |||||||||||||||||    
T  25598643 tcaattttcagaaaatatatattatgatcattgagagttagtctcacccttacct 25598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 25397172 - 25397228
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  25397172 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 25397228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 31252413 - 31252478
Alignment:
Q  199 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||| | ||||||||||||||||| ||||| || ||| | ||||| |||||||||||||||||    
T  31252413 caattagattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttag 31252478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 19471391 - 19471335
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||| ||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttacctta 19471335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 2286823 - 2286769
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 261  Q
    ||||||||||||| ||||| ||||  || |||||||| |||||||||||||||||    
T  2286823 tcaattttcagaagttatatattacaatcattgagagttagtctcacccttacct 2286769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 11288758 - 11288668
Alignment:
Q  175 ctcaatttattttccaaaattatgcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    |||||||||||||| | || ||| |  |||||| |||||| ||||||||||| |||| ||| ||||| ||||| || ||||||||||||||    
T  11288758 ctcaatttattttcaagaactattcttttaggttaatttttcagaaattatatattaagatcattgaaagataatcccacccttaccttag 11288668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 18659450 - 18659484
Alignment:
Q  229 tatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||||||||| |||||||||||||||||||    
T  18659450 tatgattattgagagttagtctcacccttacctta 18659484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 24441673 - 24441707
Alignment:
Q  229 tatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||||||||| |||||||||||||||||||    
T  24441673 tatgattattgagagttagtctcacccttacctta 24441707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 15458492 - 15458545
Alignment:
Q  211 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||| ||||| || ||||| ||||| || ||||||||||||||    
T  15458492 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttag 15458545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 15465087 - 15465140
Alignment:
Q  211 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||| ||||| || ||||| ||||| || ||||||||||||||    
T  15465087 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttag 15465140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 264
Target Start/End: Complemental strand, 28288537 - 28288509
Alignment:
Q  236 attgagagatagtctcacccttaccttag 264  Q
    |||||||||||||||||||||||||||||    
T  28288537 attgagagatagtctcacccttaccttag 28288509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 29415591 - 29415551
Alignment:
Q  229 tatgattattgagagatagtctcacccttaccttagttttg 269  Q
    ||||||||||||||| ||| ||||| |||||||||||||||    
T  29415591 tatgattattgagagttagcctcactcttaccttagttttg 29415551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 9e-79; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 80 - 263
Target Start/End: Complemental strand, 20437208 - 20437024
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    |||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  20437208 cagtatagattaagttttcattctgaacattacattacaacataattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaa 20437109  T
Q  180 tttattttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20437108 tttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 20437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 154 - 274
Target Start/End: Original strand, 41111981 - 41112100
Alignment:
Q  154 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 253  Q
    ||||||||||||||||||||  |||  ||||||| ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41111981 aatcatcatcaaaccctaactttcatcttatttttcaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 41112079  T
Q  254 ccttaccttagttttgcagaa 274  Q
    |||||||||||||||||||||    
T  41112080 ccttaccttagttttgcagaa 41112100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 32651563 - 32651627
Alignment:
Q  199 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  32651563 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 32651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 18712790 - 18712854
Alignment:
Q  199 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||    
T  18712790 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccatacctta 18712854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 19663572 - 19663517
Alignment:
Q  208 caattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  19663572 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 19663517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 20805320 - 20805376
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  20805320 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 20805376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 11158093 - 11158148
Alignment:
Q  208 caattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    |||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||    
T  11158093 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 11158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 10811839 - 10811785
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 261  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||||||||||    
T  10811839 tcaattttcagaaattctacactattattattgagagatagtctcacccttacct 10811785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 20851187 - 20851132
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  20851187 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20851132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 20857814 - 20857759
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  20857814 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20857759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 21706276 - 21706331
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  21706276 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21706331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 21710818 - 21710873
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  21710818 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21710873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 24476350 - 24476380
Alignment:
Q  233 attattgagagatagtctcacccttacctta 263  Q
    |||||||||||||||||||||||||||||||    
T  24476350 attattgagagatagtctcacccttacctta 24476380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 25091448 - 25091418
Alignment:
Q  233 attattgagagatagtctcacccttacctta 263  Q
    |||||||||||||||||||||||||||||||    
T  25091448 attattgagagatagtctcacccttacctta 25091418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 18271338 - 18271371
Alignment:
Q  229 tatgattattgagagatagtctcacccttacctt 262  Q
    ||||||||||||||| ||||||||||||||||||    
T  18271338 tatgattattgagagttagtctcacccttacctt 18271371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 18275992 - 18276025
Alignment:
Q  229 tatgattattgagagatagtctcacccttacctt 262  Q
    ||||||||||||||| ||||||||||||||||||    
T  18275992 tatgattattgagagttagtctcacccttacctt 18276025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 86 - 274
Target Start/End: Original strand, 111758 - 111948
Alignment:
Q  86 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 184  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||  |||| || |||||||||||||||||||||||||||||||    
T  111758 agattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttat 111857  T
Q  185 tttccaaaattatgcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
     |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  111858 cttccaaaactatgcaattaggtcaatttttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 111948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 86 - 271
Target Start/End: Original strand, 1055 - 1240
Alignment:
Q  86 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 184  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||  |||| ||||||| ||||||||||||||||||||||||||    
T  1055 agattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttat 1154  T
Q  185 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgca 271  Q
    ||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1155 tttccaaaactatgcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgca 1240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 86 - 271
Target Start/End: Original strand, 50056 - 50241
Alignment:
Q  86 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 184  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||  |||| ||||||| ||||||||||||||||||||||||||    
T  50056 agattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttat 50155  T
Q  185 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgca 271  Q
    ||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50156 tttccaaaactatgcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgca 50241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 80 - 274
Target Start/End: Original strand, 11212 - 11407
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    |||||| ||||||| ||||||| | ||||| ||||||||| |||||||||||||||| ||| ||| |||  || ||||||||||||||||||||||||||    
T  11212 cagtatggattaagatttcattttgaacatcacattacaacagaattaacatgatcattactcattccctccagaatcatcatcaaaccctaaccctcaa 11311  T
Q  180 tt-tattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    || |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11312 ttctattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 11407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 86 - 274
Target Start/End: Complemental strand, 930 - 740
Alignment:
Q  86 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 184  Q
    |||||||||||| || || ||||||| ||||||| || |||| |||||||| |||||||  |||| ||||||| ||||||||||||||||||||||||||    
T  930 agattaagtttttatcctgaacattatattacaagagtattatcatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttat 831  T
Q  185 tttccaaaat-tatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  830 tttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 84 - 274
Target Start/End: Original strand, 167 - 356
Alignment:
Q  84 atagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaattta 183  Q
    ||||||||||| |||| ||| ||||  | | ||||| | |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  167 atagattaagtcttcaatctgaacaccataatacaagaaaattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaattta 266  T
Q  184 ttttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  267 ttttccaaaactatgcaattaggtcaa-tttcagaaattatagattatggttattgagagatagtctcacccttaccttagttttgcagaa 356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 87 - 274
Target Start/End: Complemental strand, 8751 - 8564
Alignment:
Q  87 gattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaatttattt 186  Q
    ||||||||||||||| | ||||||| ||||||| ||||||||||| |||| ||||||| ||  |||||||||||||||||||||||||||||| ||||||    
T  8751 gattaagttttcattttgaacattaaattacaagagaattaacataatcattacccattcca-tcataatcatcatcaaaccctaaccctcaaattattt 8653  T
Q  187 tccaaaattatgcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    ||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8652 tccaaaactatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttgcagaa 8564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 87 - 274
Target Start/End: Complemental strand, 2074 - 1887
Alignment:
Q  87 gattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaatttattt 186  Q
    ||||||||||||||| | ||||||| ||||||| ||||||||||| |||| ||||||| ||  ||| |||||||||||||||||||||||||| ||||||    
T  2074 gattaagttttcattatgaacattaaattacaagagaattaacataatcattacccattcca-tcaaaatcatcatcaaaccctaaccctcaaattattt 1976  T
Q  187 tccaaaattatgcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    ||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1975 tccaaaactatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttgcagaa 1887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 84 - 261
Target Start/End: Complemental strand, 14577 - 14398
Alignment:
Q  84 atagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaattt 182  Q
    |||||||||||||||||||  ||||| ||||||||| |||||||||||||||| |||||||  |||| || |||||||||||||||||||||||||||||    
T  14577 atagattaagttttcattcggaacatcacattacaacagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaattt 14478  T
Q  183 attttccaaaat-tatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 261  Q
    || ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14477 atcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 14398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 87 - 274
Target Start/End: Complemental strand, 8046009 - 8045822
Alignment:
Q  87 gattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttatt 185  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||| |||  |||||||  |||| || |||  || ||||||||||||||||||||||||    
T  8046009 gattaagttttcattctgaacattatattacaagagaattaacattatctttacccatttcccttcagaattctcgtcaaaccctaaccctcaatttatt 8045910  T
Q  186 ttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8045909 ttccaaaactatgcaattaggtcaattt-cagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 8045822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 86 - 274
Target Start/End: Original strand, 11847984 - 11848179
Alignment:
Q  86 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 184  Q
    |||||||||||||||||| ||||||| |||| || || ||||||||||||| ||||||| || || || |||| ||||||||||||||||||||||| ||    
T  11847984 agattaagttttcattctgaacattatattataaaaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaattgat 11848083  T
Q  185 tttc------caaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||       ||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11848084 tttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 11848179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 264
Target Start/End: Original strand, 53483650 - 53483760
Alignment:
Q  154 aatcatcatcaaaccctaaccctca-atttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctca 252  Q
    |||||||||||||||||||   ||| |||  ||||| |||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  53483650 aatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtctca 53483748  T
Q  253 cccttaccttag 264  Q
    ||||||||||||    
T  53483749 cccttaccttag 53483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 15408139 - 15408205
Alignment:
Q  208 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||    
T  15408139 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatctgcagaa 15408205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 8834895 - 8834951
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 8834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 13888641 - 13888697
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  13888641 tcaattttcagaaattatacattatgatcattgagagttagcctcacccttacctta 13888697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 14486661 - 14486713
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttacct 261  Q
    ||||||||||||||||| |||||||| |||||  |||||||||||||||||||    
T  14486661 aattttcagaaattatatattatgatcattgaaggatagtctcacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 15245215 - 15245271
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||||||||||||| |||| ||| |||||||| ||| |||||||||||||||    
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttacctta 15245271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 22724742 - 22724691
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcaccctta 258  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||||||||    
T  22724742 tcaattttcagaaattctatactattattattgagagatagtctcaccctta 22724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 15747592 - 15747551
Alignment:
Q  228 ttatgattattgagagatagtctcacccttaccttagttttg 269  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  15747592 ttataattattgagagttagtctcacccttaccttagttttg 15747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 15308120 - 15308176
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||||||||||||| |||| ||| |||||||| ||| |||||||||| ||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttaactta 15308176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 16146885 - 16146830
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  16146885 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 16146830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 27906266 - 27906321
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||||| |||||||| ||||| ||||| || |||||||| |||||    
T  27906266 aattttcagaaattatacattatgatcattgaaagataatcccacccttatcttag 27906321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 15069781 - 15069811
Alignment:
Q  233 attattgagagatagtctcacccttacctta 263  Q
    |||||||||||||||||||||||||||||||    
T  15069781 attattgagagatagtctcacccttacctta 15069811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 15076381 - 15076411
Alignment:
Q  233 attattgagagatagtctcacccttacctta 263  Q
    |||||||||||||||||||||||||||||||    
T  15076381 attattgagagatagtctcacccttacctta 15076411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 14912081 - 14912138
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||| ||||| ||||  || |||||||| |||||| |||||||||||||    
T  14912081 tcaattttcagaagttatatattacaatcattgagagttagtctaacccttaccttag 14912138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 83 - 274
Target Start/End: Original strand, 30730 - 30923
Alignment:
Q  83 tatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatac-ccatacccctcataatcatcatcaaaccctaaccctcaatt 181  Q
    ||||||||| |  ||||||||  |||| || |||||| | | |||||||||||  ||| |||| ||||||| ||||||||||||||||||| ||||||||    
T  30730 tatagattaggaattcattctgcacatcactttacaacatatttaacatgatcgttacaccattcccctcaaaatcatcatcaaaccctaatcctcaatt 30829  T
Q  182 t-attttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    | |  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30830 ttaccttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 30923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 84 - 274
Target Start/End: Original strand, 18043 - 18235
Alignment:
Q  84 atagattaagttttcattctaaacattacattacaat-agaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaattt 182  Q
    |||| |||||||||||||||  |||| |||||||||  ||||||||||||| || ||||  | ||| | | ||||||||| ||||| |||||||||||||    
T  18043 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgttagaatcatcattaaaccttaaccctcaattt 18142  T
Q  183 attttccaaaat-tatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    ||||||| |||  || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18143 attttcctaaagctaagcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 18235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 80 - 261
Target Start/End: Complemental strand, 3478 - 3295
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgat-caatacccatacccctcataatcatcatcaaaccctaaccctca 178  Q
    |||||||||||||| ||||||||| ||||| ||||||||| | |||||||||||| || ||||||| ||||||| |||||||||||||||||||||||||    
T  3478 cagtatagattaagatttcattctgaacatcacattacaacaaaattaacatgattcattacccattcccctcagaatcatcatcaaaccctaaccctca 3379  T
Q  179 atttattttccaaaattatgcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacct 261  Q
    ||||  |  ||||  ||| |||||||||||||||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  3378 attttatccccaaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 3295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 80 - 261
Target Start/End: Complemental strand, 3806 - 3624
Alignment:
Q  80 cagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaa 179  Q
    |||||||||||||| ||||||||  ||||| ||||||||| | |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  3806 cagtatagattaagatttcattccgaacatcacattacaacataattaacatgatcattacccatccccctcagaatcatcatcaaaccctaaccctcaa 3707  T
Q  180 tttattttccaaaattatgcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacct 261  Q
    |||  |   |||  ||| |||||||||||||||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  3706 ttttatcctcaaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 3624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 154 - 269
Target Start/End: Complemental strand, 1841 - 1727
Alignment:
Q  154 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 253  Q
    ||||||||||||||||||||  |||  ||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  1841 aatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcac 1743  T
Q  254 ccttaccttagttttg 269  Q
    ||||||||||||||||    
T  1742 ccttaccttagttttg 1727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 154 - 269
Target Start/End: Complemental strand, 5864 - 5750
Alignment:
Q  154 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 253  Q
    ||||||||||||||||||||  |||  ||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  5864 aatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcac 5766  T
Q  254 ccttaccttagttttg 269  Q
    ||||||||||||||||    
T  5765 ccttaccttagttttg 5750  T

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Target: scaffold0456 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 181 - 268
Target Start/End: Original strand, 904 - 991
Alignment:
Q  181 ttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 268  Q
    |||| |||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  904 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 181 - 268
Target Start/End: Original strand, 8049 - 8136
Alignment:
Q  181 ttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 268  Q
    |||| |||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8049 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 8136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 45384 - 45268
Alignment:
Q  154 aatcatcatcaaaccctaaccctca-atttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctca 252  Q
    |||||||||||||||||||   ||| |||  ||||| |||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  45384 aatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtctca 45286  T
Q  253 cccttaccttagttttgc 270  Q
    |||||||||||| |||||    
T  45285 cccttaccttagatttgc 45268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 40587 - 40521
Alignment:
Q  208 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||    
T  40587 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaa 40521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 16811 - 16875
Alignment:
Q  199 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  16811 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 16875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 116887 - 116951
Alignment:
Q  199 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  116887 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 116951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 60441 - 60474
Alignment:
Q  229 tatgattattgagagatagtctcacccttacctt 262  Q
    ||||||||||||||| ||||||||||||||||||    
T  60441 tatgattattgagagttagtctcacccttacctt 60474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 17643 - 17710
Alignment:
Q  208 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttag-ttttgcagaa 274  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  17643 caattttcagaaattatacattatggttattgagagatagtctcacccttaccttagattttgcagaa 17710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 135473 - 135539
Alignment:
Q  208 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| |||||    
T  135473 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagattttcagaa 135539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 72 - 8
Alignment:
Q  199 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  72 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 8  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 22646 - 22582
Alignment:
Q  210 attttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||| | |||||||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttaccttggatttgcagaa 22582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 13623 - 13687
Alignment:
Q  199 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  13623 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 13687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 101992 - 101928
Alignment:
Q  199 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||| ||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||    
T  101992 caattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttacctta 101928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 34331 - 34276
Alignment:
Q  208 caattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  34331 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 34276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 35495 - 35438
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||| ||||| ||||  || |||||||| |||||| |||||||||||||    
T  35495 tcaattttcagaagttatacattacaatcattgagagttagtcttacccttaccttag 35438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 1453 - 1515
Alignment:
Q  212 tttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||||||||||| |||| ||| |||||||| ||||||||||||||||||| ||||||||||    
T  1453 tttcagaaattatacattaagatcattgagagttagtctcacccttaccttaattttgcagaa 1515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 680 - 780
Alignment:
Q  175 ctcaatttattttccaaaattatgcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcaga 273  Q
    |||||||||||||| | || ||| |  |||||| |||||| ||||||||||| |||| ||| ||||| ||||| || |||||||||||||||||||||||    
T  680 ctcaatttattttcaagaactattcttttaggttaatttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagttttgcaga 779  T
Q  274 a 274  Q
    |    
T  780 a 780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 12296 - 12352
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 12352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 1378 - 1441
Alignment:
Q  200 aattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    |||||| |||||||||| |||||||| || ||||| ||||| ||||||||||||||||||||||    
T  1378 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 1441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 15052 - 14997
Alignment:
Q  208 caattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    |||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||    
T  15052 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 14997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 39563 - 39503
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttt 267  Q
    ||||||||| ||||||||| |||||||| |||||||| ||| |||||||||||||| ||||    
T  39563 tcaattttctgaaattatatattatgatcattgagagttagcctcacccttacctttgttt 39503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 493082 - 493019
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcaga 273  Q
    ||||||||||||||||| |||| ||||||||| ||||| |||||||||||||||||  |||||||    
T  493082 aattttcagaaattatacatta-gattattgaaagataatctcacccttaccttagaattgcaga 493019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 5480 - 5519
Alignment:
Q  235 tattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  5480 tattgaaagatagtctcacccttaccttagttttgcagaa 5519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 9336 - 9391
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  9336 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 9391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 10239 - 10294
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||| | |||||||||||||  ||||| |||||||||||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 10294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 135438 - 135493
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||||| ||||||| |||||| ||||| |||||| ||||||||||    
T  135438 aattttcagaaattatatattatgactattgaaagataatctcacgcttaccttag 135493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 1967 - 1913
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||||||    
T  1967 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 1913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 5922 - 5857
Alignment:
Q  199 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||| | ||||||||||||||||| ||||| || ||||| ||||| || ||||||||||||||    
T  5922 caattagattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttag 5857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 23624 - 23559
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 274  Q
    ||||||||||||||||| |||||||| ||| | ||||| || ||||||||||||||  ||||||||    
T  23624 aattttcagaaattatacattatgatcattcaaagataatcccacccttaccttagaattgcagaa 23559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 2684 - 2628
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||||||| ||||| ||||| || |||||||| ||| |||||||||||||||    
T  2684 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 2628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 79545 - 79490
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  79545 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 79490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 721 - 676
Alignment:
Q  217 gaaattatagattatgattattgagagatagtctcacccttacctt 262  Q
    ||||||||| |||| ||| |||||||| ||||||||||||||||||    
T  721 gaaattatacattaagatcattgagagttagtctcacccttacctt 676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 13947 - 13894
Alignment:
Q  211 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 264  Q
    ||||||||||||||| ||||| || ||||| ||||| || ||||||||||||||    
T  13947 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttag 13894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0600 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 732 - 788
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||||||| ||||| ||||| || |||||||| ||| ||||||| |||||||    
T  732 tcaattttcagaagttatatattataatcattgagagttagcctcacccctacctta 788  T

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Target: scaffold0180 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 11630 - 11681
Alignment:
Q  214 tcagaaattataga--ttatgattattgagagatagtctcacccttacctta 263  Q
    |||||||||||| |  |||| ||||||||||| |||||||||||||||||||    
T  11630 tcagaaattatataatttataattattgagagttagtctcacccttacctta 11681  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 73285 - 73337
Alignment:
Q  209 aattttcagaaattatagattatgattattgagagatagtctcacccttacct 261  Q
    |||||||| |||||||| |||||||| ||||| ||||| || |||||||||||    
T  73285 aattttcataaattatacattatgatcattgaaagataatcccacccttacct 73337  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 121902 - 121958
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||||||  ||||| ||||| || |||||||| ||| |||||||||||||||    
T  121902 tcaattttcagattttatatattataatcattgagagttagcctcacccttacctta 121958  T

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Target: scaffold0031; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 132778 - 132834
Alignment:
Q  207 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    ||||||||||||  ||||| ||||| || |||||||| ||| |||||||||||||||    
T  132778 tcaattttcagattttatatattataatcattgagagttagcctcacccttacctta 132834  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 69749 - 69801
Alignment:
Q  211 ttttcagaaattatagattatgattattgagagatagtctcacccttacctta 263  Q
    |||||| |||||||| |||| ||| ||||| || |||||||||||||||||||    
T  69749 ttttcataaattatatattaagatcattgaaagttagtctcacccttacctta 69801  T

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