View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15606_high_11 (Length: 214)
Name: NF15606_high_11
Description: NF15606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15606_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 28158558 - 28158752
Alignment:
| Q |
18 |
atattatatatccacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgggtgtatccttgatgtggcctcaattgcaaacg |
117 |
Q |
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| T |
28158558 |
atattatatatccacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgggtgtatccttgatgtggcctcaattgcaaacg |
28158657 |
T |
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| Q |
118 |
tagagacatcgaaaaccatgatgtcgtagctttaacatggtgacatactttgtttactctaacagaaaagtgatgtcatgcatgcaagcgttgtc |
212 |
Q |
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| T |
28158658 |
cagagacatcgaaaaccatgatgtcgtagctttaacacgatcacatactttgttcactctaacagaaaagtgatgtcatgcatgcaagagttgtc |
28158752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 24 - 212
Target Start/End: Original strand, 28169133 - 28169321
Alignment:
| Q |
24 |
tatatccacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgggtgtatccttgatgtggcctcaattgcaaacgtagaga |
123 |
Q |
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| T |
28169133 |
tatatgcacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgggtgtatccttgatgtggcctcaattgcaaacgcagaga |
28169232 |
T |
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| Q |
124 |
catcgaaaaccatgatgtcgtagctttaacatggtgacatactttgtttactctaacagaaaagtgatgtcatgcatgcaagcgttgtc |
212 |
Q |
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| T |
28169233 |
catcgaaaaccatgatgtcgtagctttaacacgatcacatactttgttcactctaacagaaaagtgatgtcatgcatgcaagagttgtc |
28169321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 214
Target Start/End: Original strand, 28177224 - 28177413
Alignment:
| Q |
24 |
tatatccacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgggtgtatccttgatgtggcctcaattgcaaacgtagaga |
123 |
Q |
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| T |
28177224 |
tatatgcacattaatttcaagctaattcggtacaacagaagcatataaaatttcaagattggctgtatc--------ggcctcaattacaaacgcagaga |
28177315 |
T |
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| Q |
124 |
catcgaaaaccatgatgtcgtagctttaacatggtgac-------atactttgtttactctaacagaaaagtgatgtcatgcatgcaagcgttgtcat |
214 |
Q |
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| T |
28177316 |
catcaaaaaacatgatgtcgtaactttaacactgtcaccggtcgcatactttgttcactctaacataaaagtgatgtcaggcatgcaagcgttgtcat |
28177413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 28174189 - 28174260
Alignment:
| Q |
24 |
tatatccacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgggtgtatcctt |
95 |
Q |
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| T |
28174189 |
tatatgcacattaacttcaaactgatggggtacatcagacgcatatgaattttcaagattgggtgtatcctt |
28174260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 28161250 - 28161321
Alignment:
| Q |
24 |
tatatccacattaatttcaagctgatgggatacatcagaagcatatgaaatttcaagattgggtgtatcctt |
95 |
Q |
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| T |
28161250 |
tatatgcacattaatttcaagctaattcggtacatcagaagcatagaaaatttcaagattggctgtatcctt |
28161321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 28182843 - 28182896
Alignment:
| Q |
95 |
tgatgtggcctcaattgcaaacgtagagacatcgaaaaccatgatgtcgtagct |
148 |
Q |
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| T |
28182843 |
tgatgtggcctcaattgcagttggagagacatcaaaaaccatgatgtcatagct |
28182896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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