View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15606_high_8 (Length: 267)
Name: NF15606_high_8
Description: NF15606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15606_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 43031742 - 43031487
Alignment:
| Q |
1 |
ttcttaattcctaattattattctctaattatttgtactaaatgaaggttctgttgtggataattggggataactgataagctagttgacttagt----- |
95 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
43031742 |
ttcttaattcctatttattattctctaattatttgtactaaatgaaggttctgttgtggataattggggataactgataagctaactgacatagttaata |
43031643 |
T |
|
| Q |
96 |
--agtagtagataagtttgctgacagtggataagccggaagattgaattcctaagatttagtaaaatttgttattgaactagctggtgaaggtgaatatg |
193 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43031642 |
ggaatagtagataagtttgctgatagtggataagccggaagattgaattcctaagatttagtaaaatttgttattgaactagctggtgaaggtgaatatg |
43031543 |
T |
|
| Q |
194 |
aaatgacataaaataaaatagaagcaatacattgagacatttttgctagaggcaca |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43031542 |
aaatgacataaaataaaatagaagcaatacattgagacatttttgctagaggcaca |
43031487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University