View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15606_high_9 (Length: 251)
Name: NF15606_high_9
Description: NF15606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15606_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 23935596 - 23935823
Alignment:
| Q |
18 |
aatatgaacataaacaacaagaaacctaaacacaaacaaaatgaagaacacggaaactacattatgaatatatatgctaaatttacgaagatattctttc |
117 |
Q |
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| T |
23935596 |
aatatgaacataaacaacaagaaacctaaacacaaacaaaatgaagaacacagaaactacattatgaatatatatgctaaatttacgacgatattctttc |
23935695 |
T |
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| Q |
118 |
tcattttcttctttgaaagaat-ttttgaacctgaataagaaacttttgtgtaacaggtttttggttacattggtcataaacgaaaagagaagaaaagat |
216 |
Q |
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| T |
23935696 |
t--ttttcttctatgaacgaatgctttgaacctgaaatagaaacttttgtgtaaca-gtttttggttacattggtcataaacgaaaaaagaagaaaagat |
23935792 |
T |
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| Q |
217 |
gagcatgctaccaagtttagtcatgaaaaag |
247 |
Q |
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| T |
23935793 |
gagaatgttaccaagtttagtgatgaaaaag |
23935823 |
T |
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