View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15606_low_10 (Length: 328)
Name: NF15606_low_10
Description: NF15606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15606_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 193 - 319
Target Start/End: Original strand, 26200573 - 26200701
Alignment:
| Q |
193 |
gtgctttctttttatacactcaactgaattcttttgactcatgcactcaacgaatttcttttgacaac--atgtagacaacgaatttcttttgattttct |
290 |
Q |
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| T |
26200573 |
gtgctttctttttatacactcaactgaatttttttgactcatgcactcaacgaatttcttttgacaacatatgtagacaacgaatttcttttgattttct |
26200672 |
T |
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| Q |
291 |
tttaacaatgtacaacacctttttctttt |
319 |
Q |
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| T |
26200673 |
tttaacaatgtacagcacctttttctttt |
26200701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 26123847 - 26123908
Alignment:
| Q |
21 |
acaacaatgaatctttctttctttctccaattgcaaacagaagactgatcaatagaaacaat |
82 |
Q |
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| T |
26123847 |
acaacaatgaatctttctttctttctccaattgcaaacagaagactgatcgatagaaacaat |
26123908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 26168364 - 26168425
Alignment:
| Q |
21 |
acaacaatgaatctttctttctttctccaattgcaaacagaagactgatcaatagaaacaat |
82 |
Q |
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| T |
26168364 |
acaacaatgaatctttctttctttctccaattgcaaacagaagactgatcgatagaaacaat |
26168425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 26168422 - 26168475
Alignment:
| Q |
118 |
caatctttgctttagagaagctaactctgaatttaacaaacggtgctttctttt |
171 |
Q |
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| T |
26168422 |
caatctatgctttagagaagcaaactgtgaatttaacaaacggtgctttctttt |
26168475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 26200455 - 26200509
Alignment:
| Q |
18 |
cacacaacaatgaatctttctttctttctccaattgcaaacagaagactgatcaataga |
76 |
Q |
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| T |
26200455 |
cacacaacaatgaatctt----tctttctccaattgcaaacagaagactgatcgataga |
26200509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 26200509 - 26200556
Alignment:
| Q |
131 |
agagaagctaactctgaatttaacaaacggtgctttcttttttatttc |
178 |
Q |
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| T |
26200509 |
agagaagccaattgtgaatttaacaaacggtgctttcttttctatttc |
26200556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 26123905 - 26123959
Alignment:
| Q |
118 |
caatctttgctttagagaa-gctaactctgaatttaacaaacggtgctttctttt |
171 |
Q |
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|||||| |||||||||||| || |||| |||||||||||||| |||||||||||| |
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| T |
26123905 |
caatctatgctttagagaaagccaactgtgaatttaacaaacagtgctttctttt |
26123959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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