View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15606_low_11 (Length: 322)
Name: NF15606_low_11
Description: NF15606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15606_low_11 |
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| [»] scaffold0421 (2 HSPs) |
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Alignment Details
Target: scaffold0421 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 139 - 304
Target Start/End: Original strand, 13420 - 13585
Alignment:
| Q |
139 |
tgagaaacgcggtctctgctctctccatctcttcgtcttcgccatctcctcccaaacttcgatctttgaccgccatctcctcctagtctccgatctccga |
238 |
Q |
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| T |
13420 |
tgagaaacgcggtctctgctctctccatctctctgtctttgccatctcctcccaatctccggtctttgaccgccatctcctcatagtctccgatctccga |
13519 |
T |
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| Q |
239 |
ccgccatctcttcccagtctccgacggccgcattctctcaaacggtctcttctccttctgcaattc |
304 |
Q |
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| T |
13520 |
ccgccatctcttcccagtctccgacggctgcattctctctaacggtctcttctccttctgcgattc |
13585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 13270 - 13336
Alignment:
| Q |
7 |
aaaaagattcatgtaccactcttttggtacacccttttctaccaccaatgacatggcatggaaatat |
73 |
Q |
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| T |
13270 |
aaaaagattcatgtaccactcttttggtacacccttttctaccaccgatgacatggcatggaaatat |
13336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 39034016 - 39033975
Alignment:
| Q |
209 |
cgccatctcctcctagtctccgatctccgaccgccatctctt |
250 |
Q |
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| T |
39034016 |
cgccatctcctcccagtctccgatctccgaccgccatctctt |
39033975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 39034043 - 39033977
Alignment:
| Q |
151 |
tctctgctctctccatctcttcgtcttcgccatctcctcccaaacttcgatctttgaccgccatctc |
217 |
Q |
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| T |
39034043 |
tctcttctctctccatctctctgtcgtcgccatctcctcccagtctccgatctccgaccgccatctc |
39033977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 47345407 - 47345357
Alignment:
| Q |
143 |
aaacgcggtctctgctctctccatctcttcgtcttcgccatctcctcccaa |
193 |
Q |
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| T |
47345407 |
aaacgcgatctctgctctctccatctctctgtcatcgccatctcctcccaa |
47345357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 47345372 - 47345319
Alignment:
| Q |
240 |
cgccatctcttcccagtctccgacggccgcattctctcaaacggtctcttctcc |
293 |
Q |
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| T |
47345372 |
cgccatctcctcccaatctccgaccgccgcattctctctaacgatctcttctcc |
47345319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 47345551 - 47345492
Alignment:
| Q |
14 |
ttcatgtaccactcttttggtacacccttttctaccaccaatgacatggcatggaaatat |
73 |
Q |
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| T |
47345551 |
ttcatgtattactcttttggtacacccttttatagcactgatgacatgacatggaaatat |
47345492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 3798187 - 3798236
Alignment:
| Q |
242 |
ccatctcttcccagtctccgacggccgcattctctcaaacggtctcttct |
291 |
Q |
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| T |
3798187 |
ccatctcctctcagtctccgaccgccgcattctctctaacgatctcttct |
3798236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 34165028 - 34164988
Alignment:
| Q |
209 |
cgccatctcctcctagtctccgatctccgaccgccatctctt |
250 |
Q |
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| T |
34165028 |
cgccatctcctcc-agtctccgatctccgaccgtcatctctt |
34164988 |
T |
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