View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15606_low_16 (Length: 270)
Name: NF15606_low_16
Description: NF15606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15606_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 4421743 - 4421994
Alignment:
| Q |
1 |
tgatgtgattaggaatgaacttgaggttatccatgaacatgaatctatattatcaccagtcacaaacaagactttggatgttagtggtattgttgctgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4421743 |
tgatgtgattaggaatgaacttgaggttatccatgaacatgaatctatattatcaccagtcacaaacaagactttggatgttagtggtattgttgctgca |
4421842 |
T |
|
| Q |
101 |
tatgatgctcatgtagatcctactttacagaaagaggttgattttatgaataattggatggctctggctgctgttaatgacactccttttattccggtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4421843 |
tatgatgctcatgtagatcctactttacagaaagaggttgattttatgaataattggatggctctggctgctgttagcgacactccttttattccggtta |
4421942 |
T |
|
| Q |
201 |
atacaaagagaaagaaagggactacgaatagcaaggcctcttaccaaacccg |
252 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4421943 |
atacaaagaaaaagaaagggactacgaatagcaaggcctcttaccaaacccg |
4421994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University