View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15606_low_2 (Length: 532)
Name: NF15606_low_2
Description: NF15606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15606_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 60 - 501
Target Start/End: Complemental strand, 18787380 - 18786939
Alignment:
| Q |
60 |
gcttttacttagaggtcgagaattagagtccagattcaggtttgatcggttgattatggtgtcctccctgatggaccagaaattaagcagtgtcttagtg |
159 |
Q |
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| T |
18787380 |
gcttttacttcgagatcgagaattagtgtctagtttcatgttttttcggttgattatggtgtcttctctgatggaccagaaactaaggagtgttttagtg |
18787281 |
T |
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| Q |
160 |
atttcgcgtatggtgtatcgatcacttttgattctagattagagtctgttttctagactcaagtttttggtagtggaatctgaatgagtggtggaataag |
259 |
Q |
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| T |
18787280 |
atttcgcgtatggtggaccgatcacttttgattcgagatcagagtctgttttctagactcaaatttttggtagtggaatctaaatgagtggtggaataag |
18787181 |
T |
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| Q |
260 |
acattttcgggtgtttaattggacttagctatagtgatgagaagatgggtttctgctcacagggttttgattagtttgatggnnnnnnnatagaaatttt |
359 |
Q |
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| T |
18787180 |
acattttcgggtgtttaattggacttagctatagtgatgagaagatgggtatctgctcgcagggttttgattggtttgatggtttttttatagaaatttt |
18787081 |
T |
|
| Q |
360 |
tgtgagtagcgggtgacaacggtttagaatttgtgcatgtggccattcacaatgtcgtttgtgattttcgctcaagtttgatttcgacgattatttgggg |
459 |
Q |
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| T |
18787080 |
tgtgagtaccggatgacaacggtttggaatttgtgcatgtggccattcacaatatcctttgtgattttcgctgaagtttggtttcgacgattatttaggg |
18786981 |
T |
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| Q |
460 |
gtttggttttgatttaggtgttgactttgatttcggtggtta |
501 |
Q |
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| T |
18786980 |
gtttggttttgatttaggtgttgactttgatttcggtggtta |
18786939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 331
Target Start/End: Original strand, 36790063 - 36790167
Alignment:
| Q |
227 |
tggtagtggaatctgaatgagtggtggaataagacattttcgggtgtttaattggacttagctatagtgatgagaagatgggtttctgctcacagggttt |
326 |
Q |
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|||| ||||||| |||| ||||| | ||||| | |||||| ||||||||||||||| ||||||| ||||| ||||||| |||||| |||||||| |
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| T |
36790063 |
tggtggtggaatttgaaggagtgtttgaatatgtgattttcacgtgtttaattggactcagctatattgatgggaagatgatggtctgcttccagggttt |
36790162 |
T |
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| Q |
327 |
tgatt |
331 |
Q |
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||||| |
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| T |
36790163 |
tgatt |
36790167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 31122852 - 31122773
Alignment:
| Q |
227 |
tggtagtggaatctgaatgagtggtggaataagacattttcgggtgtttaattggacttagctatagtgatgagaagatg |
306 |
Q |
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| T |
31122852 |
tggtggtggaatctgaattagttgtggaatatgtcattttcgagtgcttaattgaacttagatatggtgacgagaagatg |
31122773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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