View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15606_low_24 (Length: 213)

Name: NF15606_low_24

Description: NF15606

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15606_low_24

[»] chr4 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 137; E-Value: 1e-71

Query Start/End: Original strand, 1 - 141

Target Start/End: Original strand, 8879673 - 8879813

Alignment:

Q	1	taatatcattaagttaaattcttgaggctaataaattttactaaagcatctacgtacatgctaaactcaatgctacattttatttttaaaggatcaatgc	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8879673	taatatcattaagttaaattcttgaggctaataaattttactaaagtatctacgtacatgctaaactcaatgctacattttatttttaaaggatcaatgc	8879772	T

Q	101	tacatttttagaatttaacttaatagaaataagaaatgaaa	141	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8879773	tacatttttagaatttaacttaatagaaataagaaatgaaa	8879813	T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 160 - 206

Target Start/End: Complemental strand, 24720774 - 24720728

Alignment:

Q	160	tttctcacatcttgaggaattggtttatccttaacttattcatttca	206	Q
		\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	24720774	tttctcagatctggaggaattggtttatcattaacttattcgtttca	24720728	T

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