View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15606_low_3 (Length: 471)
Name: NF15606_low_3
Description: NF15606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15606_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 34572627 - 34572171
Alignment:
| Q |
1 |
tgtgatgacaaaa-tttagtttaaaatacactttgattgaaggaatgaattaattgcttttt----cttcttttcaattaaggtattaagttcctatttt |
95 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34572627 |
tgtgatgacaaaaatttagtttaaaatacactttgattgaaggaatgaattaattgctttttttttcttcttttcaattaaggtattaagttcctatttc |
34572528 |
T |
|
| Q |
96 |
gtaaatttgaagatgaacttaaacgcttactttaagggctaattaaaatgtctattcacttgatctagatttggtttaagcactttaatcatatgttttg |
195 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34572527 |
gtaaatttgaagatgaacttaa-cgcttactttaagggctaattaaaatgtctattcacttgatctagatttggtttaagcactttaatcatatgttttg |
34572429 |
T |
|
| Q |
196 |
aatttaaagtctatgagcacattgtggttgttgggaccatattgcagccgcagttgtggcacatcagcacatttgttagctattttcggcaatttcaata |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34572428 |
aatttaaagtctatgagcacattgtggttgttgggaccatattgcagccgcagttgtggcacatcagcacatttgttagctattttcggcaatttcaata |
34572329 |
T |
|
| Q |
296 |
caactagaaccattgcaattttttaaaaccataagtactatcttatggtctgcttggattgaattgtctaaatttcaaacaagtgttaatctctgaacca |
395 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34572328 |
caactagaaccattacaattttttaaaaccataagtactatcttatggtctgcttggattgaattgtctaaatttcaaacaagtgttaatctctgaacca |
34572229 |
T |
|
| Q |
396 |
tttgtaaccataacatgggaaggtatgtgcagttcgcgactgaaaattgcatacaaga |
453 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
34572228 |
tttgtaaccataacatgggaaggtatgtgcagttcgcgactgaatattgcatacaaga |
34572171 |
T |
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