View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15606_low_5 (Length: 453)
Name: NF15606_low_5
Description: NF15606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15606_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Original strand, 747838 - 748256
Alignment:
| Q |
16 |
atgaacaagttcttgctcagaagctgaggttgagccagggaaatctaagagagagtttatacaaagtgaagggtatctagttttgctgcaggttctggag |
115 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
747838 |
atgaactagttcttgctcagaagctgaggttgagccagggaaatctaagagagagtttatacaaagtgaagggtatctagttttgctgcaggttcgggag |
747937 |
T |
|
| Q |
116 |
attgcttgagttggtttggaatggagaaggtttgaattgttggatgaagcacgagaccggaccacggtgatcagtgcagccgagatggcggaagcaatga |
215 |
Q |
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| T |
747938 |
attgcttgagttggtttggaatggagaaggtttgaattgttggatgaagcacgagaccggaccacggtgatcagtgcagccgagatggcggaagcgatga |
748037 |
T |
|
| Q |
216 |
tcaagacggcggcgaggatggacagtatgatgagcttcttattgcttttaggagaggaatttgatgtggtggaaggtgttagaggtgcggtggagcgacg |
315 |
Q |
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| T |
748038 |
tcaagacggcggcgaggatggacagcatgatgagcttcttattgcttttaggagaggaatttgatgtggtggagggtgttagaggtgcggtggatcgacg |
748137 |
T |
|
| Q |
316 |
ggaggagccaccagggtcagacggtccaagtctatcaaagtccattatgaaatattgaatattgtagtgaggatttgagagagaaagagtgttggttagt |
415 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
748138 |
ggaggagccaccaggatcagacggtccaagtctatcaaagtccattatgaaatattgaatattgtagtgaggatttgagagagaaagagtgttagttagt |
748237 |
T |
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| Q |
416 |
tatgatgagaggttgtagt |
434 |
Q |
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||||||||||||||||||| |
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| T |
748238 |
tatgatgagaggttgtagt |
748256 |
T |
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