View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15606_low_7 (Length: 402)
Name: NF15606_low_7
Description: NF15606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15606_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 40841713 - 40841318
Alignment:
| Q |
1 |
tggttgaggcatatatattgtggtagaatagtttaaaaattaaaatgcatatcaatgtttgatctttttaccccaaattggcaacctaaataaaagagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40841713 |
tggttgaggcatatatattgtggtagaatagtttaaaaattaaaatgcatatcaatgtttgatctttttatcccaaattggcaacctaaataaaagagga |
40841614 |
T |
|
| Q |
101 |
taaatttcacatctcttgcactataaattcacatccattt---------tttcaacaaaaacaaaacaacatggcatcatctttaaggttcctcaaaatg |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40841613 |
taaatttcacatctcttgcactataaattcacatccatttcttccattttttcaacaaaaacaaaacaacatggcatcatctttaaggttcctcaaaatg |
40841514 |
T |
|
| Q |
192 |
tgtctgtcttttacaatgtttttgcacttcctcttcttcatgtcaccttcactctcatctc--caact-catcccaaaaacaatgacattctcctttctt |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | || ||||| ||||||||||||||||||||||||||||||| |
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| T |
40841513 |
tgtctgtcttttacaatgtttttgcacttcctcttcttcatttcaccttcattctcctttcttcaactgcatcccaaaaacaatgacattctcctttctt |
40841414 |
T |
|
| Q |
289 |
caactctcataagaggacttaacctttttcctaaaagttccataaacataccagagaatgatcctcttgtcctcgatggaaacattgtggagaaaa |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
40841413 |
caactctcataagaggacttaacctttttcctaaaagttccataaacataccagagaatgatcctcttgtcctctatcgaaacattgtggagaaaa |
40841318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 134 - 382
Target Start/End: Complemental strand, 40846126 - 40845875
Alignment:
| Q |
134 |
tccattttttcaacaaaaacaaaacaacatggcatcatctttaaggttcctcaaaatgtgtctgtcttttacaatgtttttgcacttcctcttcttcatg |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40846126 |
tccattttttcaacaaaaacaaaacaacatggcatcatctttaaggttcctcaaaatgtgtctgtcttttacaatgttgttgcacttcctcttcttcatt |
40846027 |
T |
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| Q |
234 |
tcaccttcactctcatctc--caact-catcccaaaaacaatgacattctcctttcttcaactctcataagaggacttaacctttttcctaaaagttcca |
330 |
Q |
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|||||||| ||||| | || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40846026 |
tcaccttcgctctcctttcttcaactgcatcccaaaaacaatgacattctcctttcttcaactctcataagaggacttaacctttttcctaaaagttcca |
40845927 |
T |
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| Q |
331 |
taaacataccagagaatgatcctcttgtcctcgatggaaacattgtggagaa |
382 |
Q |
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| T |
40845926 |
taaacataccagagaatgatcctcatgtcctccatggaaacattgtggagaa |
40845875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 136 - 293
Target Start/End: Complemental strand, 40852913 - 40852765
Alignment:
| Q |
136 |
cattttttcaacaaaaacaaaacaacatggcatcatctttaaggttcctcaaaatgtgtctgtcttttacaatgtttttgcacttcctcttcttcatgtc |
235 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| || |
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| T |
40852913 |
cattctttcaacaaaaacaaggcaacatggcatcatctttaaggttcctcaaaatgtgtctgtcttttatgatgtt------cttcc---tcttcatttc |
40852823 |
T |
|
| Q |
236 |
accttcactctcatctccaactcatcccaaaaacaatgacattctcctttcttcaact |
293 |
Q |
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|| |||| |||||||||| || |||||| |||||||||||||||||||||||||||| |
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| T |
40852822 |
acattcatactcatctccagcttatcccacaaacaatgacattctcctttcttcaact |
40852765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 40852735 - 40852674
Alignment:
| Q |
293 |
tctcataagaggacttaacctttttcctaaaagttccataaacataccagagaatgatcctc |
354 |
Q |
| |
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|||||||||||| ||||| |||||||| ||| ||||||||||| ||||||||||||||||| |
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| T |
40852735 |
tctcataagagggcttaatctttttccaaaagattccataaacacaccagagaatgatcctc |
40852674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 26809307 - 26809206
Alignment:
| Q |
3 |
gttgaggcatatatattgtggtagaatagtttaaaaattaaaatgcatatcaatgtttgatctttttaccccaaattggcaacctaaataaaagaggata |
102 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26809307 |
gttgaggcatatatattgtggtagaatagtttaaaaattaaaatgcatatcaatgtttgatctttttactccaaattggcaacctaaataaaagaggata |
26809208 |
T |
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| Q |
103 |
aa |
104 |
Q |
| |
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|| |
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| T |
26809207 |
aa |
26809206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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