View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15607_high_2 (Length: 372)
Name: NF15607_high_2
Description: NF15607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15607_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 22125502 - 22125636
Alignment:
| Q |
7 |
acagaaaaagaaacaagggataacatccttttacacaaatggagtgaaacaggagtagagttataaaataaaacaactattagcttcaaatgtattttac |
106 |
Q |
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| T |
22125502 |
acagaaaaagaaaaaagggataacatccatttacacaaatggagtgaaacaggagtagagttataaaataaaacaactattagcttcaaatgtattttac |
22125601 |
T |
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| Q |
107 |
aaaatgattactataattgaagaaactatagctcc |
141 |
Q |
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| T |
22125602 |
aaaatgattaatataattgaagaaactatagctcc |
22125636 |
T |
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Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 198 - 372
Target Start/End: Original strand, 22125693 - 22125888
Alignment:
| Q |
198 |
ttggtttatgttacccccatcaacgtaaagaacaatatattaataaattagtccaaggttatcaa---------------------aaatacaatcaacc |
276 |
Q |
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| T |
22125693 |
ttggtttatgttacccccatcaacgtaaagaacaatatattaataaattagtccaaggttatcaaaaataatagataatcattcaaaaatacaatcaacc |
22125792 |
T |
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| Q |
277 |
aaattgataagtgcttgataccctcgactacttgattcatattcacctcttgatgttgatcaaatgacagtgaaccaaattgagttaagtcccttt |
372 |
Q |
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| T |
22125793 |
aaattgataagtgcttgataccctcgactacttgattcatattcaactcttgatgttgatcaaatgacagtcaaccaaattgagttaagtcccttt |
22125888 |
T |
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