View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15607_high_3 (Length: 365)
Name: NF15607_high_3
Description: NF15607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15607_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 4986100 - 4985817
Alignment:
| Q |
19 |
ggacatcatcatcatgcaaaaatatggtaagacacactaaccttaaaaatgagactgttannnnnnnaaaccttttttatgacataacagttgccataat |
118 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4986100 |
ggacattaacatcatgcaaaaatatggtaagacacactaaccttaaaaatgagactgttatttttttaaaccttttttatgacataacagttgccataat |
4986001 |
T |
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| Q |
119 |
ctcaaggaatctcacctacaaagttcattgtcaacagttaggtttgaaatttgattgagactttggagctcaaaattttcaactgtcggcaagtagtgtc |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
4986000 |
ctcaaggaatctcaccgacaaagttcattgtcaacagttaggtttgaaatttgattgagactttggagctcaaaattttctactttcggcaagtagtgtc |
4985901 |
T |
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| Q |
219 |
ctatatttacattaaaattacaagagtttgtgccgcaatttaaacaaattttgatacacaatcaagaataaaatatcttctcag |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4985900 |
ctatatttacattaaaattacaagagtttgtgccgcaatttaaacaaattttgatatacaatcaagaataaaatatcttctcag |
4985817 |
T |
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