View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15607_high_4 (Length: 349)
Name: NF15607_high_4
Description: NF15607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15607_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 41590994 - 41591326
Alignment:
| Q |
1 |
ttaagagactaattgtctagagtgtttggttccacttcttttcaccgcagttgcgcgtcctcaagaccttttgacgtgaaaataagaagctaacatttgt |
100 |
Q |
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| T |
41590994 |
ttaagagactaattgtttagagtgtttggttccacttcttttcaccgcagtcgcgcgtcctcaagaccttttgacgtgaaaataagaagctaacatttgt |
41591093 |
T |
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| Q |
101 |
tgcttccgaaaaacacgcgtctatcaggcttcccagcacagttccaaacaaaggcctcatttggtaaatttgtgtaccaaaatgtttcagaggtatgttg |
200 |
Q |
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| T |
41591094 |
tgcttcagaaaaacacgcgtctatcaggcttcccagaacagttccaaacaaaggcctcatttggtaaacttgtgtaccaaaatgtttcagaggtatattg |
41591193 |
T |
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| Q |
201 |
atttgaagggnnnnnnnggtaaatttactctcatgtttgtgtttcttccaaatgnnnnnnnnnntgcttgggttgtttagttgatctttgatgttggaaa |
300 |
Q |
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| T |
41591194 |
atttgaagggaaaaaaaggtgaatttactctcatgtttgtgtttcttccaaatg-aaaaaaaaatgcttgggttgtttagttgatctttgatgttggaaa |
41591292 |
T |
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| Q |
301 |
gcagcatggagtatgatctacaaattttgatgat |
334 |
Q |
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| T |
41591293 |
gcagcatggagtatgatctacaaattttgatgat |
41591326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 265 - 332
Target Start/End: Original strand, 41574804 - 41574871
Alignment:
| Q |
265 |
tgcttgggttgtttagttgatctttgatgttggaaagcagcatggagtatgatctacaaattttgatg |
332 |
Q |
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| T |
41574804 |
tgcttgggttgtttagttgatctttggtgttggaaagcagcatggagtatgatccacaaattttgatg |
41574871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 41584402 - 41584496
Alignment:
| Q |
13 |
ttgtctagagtgtttggttccacttcttttcaccgcagttgcgcgtcctcaagaccttttgacgtgaaaataagaagctaacatttgttgcttcc |
107 |
Q |
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| T |
41584402 |
ttgtctagactgtttggttccacttcttttcaccacaatcgcgcgtccataagaccttttgatgtgaaaatgagaagttaatatttgttgcttcc |
41584496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 41571990 - 41572083
Alignment:
| Q |
14 |
tgtctagagtgtttggttccacttcttttcaccgcagttgcgcgtcctcaagaccttttgacgtgaaaataagaagctaacatttgttgcttcc |
107 |
Q |
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| T |
41571990 |
tgtcgagactgtttggttccacttcttttcaccacagtcgcgcatccatgagattttttgacctgaaaatgagaagttaacatttgttgcttcc |
41572083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 41584633 - 41584687
Alignment:
| Q |
280 |
gttgatctttgatgttggaaagcagcatggagtatgatctacaaattttgatgat |
334 |
Q |
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| T |
41584633 |
gttgttctttggttttggaaagcagcatggagcatgatccacaaattttgatgat |
41584687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 6981057 - 6981155
Alignment:
| Q |
22 |
gtgtttggttccacttcttttcaccgcagttgcgcgtcctcaagaccttttgacgtgaaaataagaagctaacatttgttgcttccgaaaaacacgcgt |
120 |
Q |
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| T |
6981057 |
gtgtttggttccatatctttttaccgcagctgcgcgttcacaaggccttttgacttgataatgagaagctaacatttgtttctttggaaaaacatgcgt |
6981155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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