View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15607_high_6 (Length: 344)

Name: NF15607_high_6
Description: NF15607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15607_high_6
NF15607_high_6
[»] chr2 (1 HSPs)
chr2 (1-337)||(34876767-34877104)
[»] chr7 (1 HSPs)
chr7 (7-331)||(18365051-18365376)
[»] chr4 (3 HSPs)
chr4 (14-325)||(20596184-20596496)
chr4 (14-138)||(13046577-13046701)
chr4 (85-163)||(9651298-9651376)
[»] chr6 (2 HSPs)
chr6 (91-216)||(4228289-4228413)
chr6 (91-216)||(4172680-4172804)
[»] chr5 (3 HSPs)
chr5 (216-313)||(21299148-21299244)
chr5 (216-313)||(21304854-21304950)
chr5 (216-313)||(21312691-21312787)
[»] scaffold0028 (2 HSPs)
scaffold0028 (92-212)||(39114-39233)
scaffold0028 (223-313)||(38836-38925)
[»] chr1 (1 HSPs)
chr1 (208-313)||(16244950-16245055)
[»] chr3 (1 HSPs)
chr3 (270-325)||(19430137-19430192)


Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 34876767 - 34877104
Alignment:
Q  1 ttattgaatcattatttaacaatcatcaccacaaaacaacgacttcgcctattttctcataattcaagtaaaagaattata-taacacaccatgataagc 99  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34876767 ttatcgaatcattatttaacaatcatcaccacaaaacaacgacttcacctattttctcataattcaagtaaaagaattataataacacaccatgataagc 34876866  T
Q  100 atcatgttcaacaactatcaatcattcattcgtcctcataaagtcatattaatctattcacaaagagacttacaagttattcggtcttaaaaatcatttc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34876867 atcatgttcaacaactatcaatcattcattcgtcctcataaagtcatattaatctattcacaaagagacttacaagttattcggtcttaaaaatcatttt 34876966  T
Q  200 caacaaagttcgtctatttggtaaaaatccccatttttcggttaactctacagtaacaaggaagaccaaatcatttgcctcaactatgcatatacagtaa 299  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34876967 caacaaagtccgtctatttggtaaaaatccccattttccggttaactctaaagtaacaaggaagaccaaatcatttgcctcaactatgcatatacagtaa 34877066  T
Q  300 tcaaatttatgtgcggtcgcatatacgtgttcatctca 337  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  34877067 tcaaatttatgtgcggttgcatatacgtgttcgtctca 34877104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 18365376 - 18365051
Alignment:
Q  7 aatcattatttaacaatcatcaccacaaaacaacgacttcgcctattttctcataattcaagtaaaagaattatataacacaccatgataagcatcatgt 106  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  18365376 aatcattatttaacaatcatcatcataaaacaacgacttcgcctattttctcataattcaagtaaaagaattatataacacaccatggtaaacatcatgt 18365277  T
Q  107 tcaacaactatcaatcattcattcgtcctcataaagtcatattaatctattcacaaagagacttacaagttattcggtcttaaaaatcatttccaacaaa 206  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||     
T  18365276 tcaaaaactatcaatcattcattcatcctcataaagtcatattaacgtattcgcaaagagacttgcaagttattcggtcttaaaaatcatttccgacaag 18365177  T
Q  207 gttcgtctattt-ggtaaaaatccccatttttcggttaactctacagtaacaaggaagaccaaatcatttgcctcaactatgcatatacagtaatcaaat 305  Q
    ||  || ||||| |||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| ||||||  |    
T  18365176 gtgtgtatatttcggtaaaaatcccaatttttcggttaactctaaagaaacaaggaagaccaactcatttgcctcaactatgcatatacaataatcactt 18365077  T
Q  306 ttatgtgcggtcgcatatacgtgttc 331  Q
    | |||||| || |||||||| |||||    
T  18365076 taatgtgcagttgcatatacatgttc 18365051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 14 - 325
Target Start/End: Complemental strand, 20596496 - 20596184
Alignment:
Q  14 atttaacaatcatcaccacaaaacaacgacttcgcctattttctcataattcaagtaaaagaattatataacacaccatgataagcatcatgttcaacaa 113  Q
    |||||| ||||||||| ||||||||| ||| || |||||||| |||||||||||||||||||| |||||| || | |||||||| ||||||||||||||     
T  20596496 atttaataatcatcactacaaaacaatgacatcacctattttatcataattcaagtaaaagaagtatatatcatatcatgataaacatcatgttcaacac 20596397  T
Q  114 ctatcaatcattcattcgtcctcataaagtcatattaatctattcacaaagagacttacaagttattcggtcttaaaaatcatttccaacaaagttcgtc 213  Q
    ||||||| |||  |||| |||| || || ||||||||   ||||||||||||||||| || |||||  |||| ||||||||||||   ||||  ||||||    
T  20596396 ctatcaaccatcaattcatccttattaaatcatattatcttattcacaaagagacttgcaggttatctggtcataaaaatcatttttgacaagattcgtc 20596297  T
Q  214 tattt-ggtaaaaatccccatttttcggttaactctacagtaacaaggaagaccaaatcatttgcctcaactatgcatatacagtaatcaaatttatgtg 312  Q
    ||||| ||||||||| |  |||||||||||| ||||| || ||| |||  |||||| |||||| ||||||||||||||||||| |||||| |||| ||||    
T  20596296 tatttcggtaaaaattcatatttttcggttagctctaaagaaacgagggggaccaactcatttacctcaactatgcatatacaataatcatatttgtgtg 20596197  T
Q  313 cggtcgcatatac 325  Q
    | || ||||||||    
T  20596196 cagttgcatatac 20596184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 13046701 - 13046577
Alignment:
Q  14 atttaacaatcatcaccacaaaacaacgacttcgcctattttctcataattcaagtaaaagaattatataacacaccatgataagcatcatgttcaacaa 113  Q
    |||||| | |||| || |||||||||||| ||| |||||||||||| ||||||| ||||||||||||||| || | |||||||| |||||| |||||||     
T  13046701 atttaatagtcattactacaaaacaacgagttcacctattttctcacaattcaaataaaagaattatatatcatatcatgataaacatcatattcaacac 13046602  T
Q  114 ctatcaatcattcattcgtcctcat 138  Q
    |||| || |||  |||| |||||||    
T  13046601 ctataaaccatcaattcatcctcat 13046577  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 163
Target Start/End: Original strand, 9651298 - 9651376
Alignment:
Q  85 cacaccatgataagcatcatgttcaacaactatcaatcattcattcgtcctcataaagtcatattaatctattcacaaa 163  Q
    |||| |||||||| |||||||||||||| |||| |||||||||| | || ||||| | |||||| || |||||||||||    
T  9651298 cacatcatgataaacatcatgttcaacacctattaatcattcatacatcttcatacaatcatatcaaactattcacaaa 9651376  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 216
Target Start/End: Complemental strand, 4228413 - 4228289
Alignment:
Q  91 atgataagcatcatgttcaacaactatcaatcattcattcgtcctcataaagtcatattaatctattcacaaagagacttacaagttattcggtcttaaa 190  Q
    ||||||| |||||| ||||||| ||||||||||||||| | |  ||||| | |||| | || ||||||||||| ||| || |||| ||||||||||||||    
T  4228413 atgataaacatcatattcaacacctatcaatcattcatacatattcatataatcatgtcaaactattcacaaa-agatttgcaagatattcggtcttaaa 4228315  T
Q  191 aatcatttccaacaaagttcgtctat 216  Q
     ||||||| | |||||||||||||||    
T  4228314 gatcattttcgacaaagttcgtctat 4228289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 91 - 216
Target Start/End: Complemental strand, 4172804 - 4172680
Alignment:
Q  91 atgataagcatcatgttcaacaactatcaatcattcattcgtcctcataaagtcatattaatctattcacaaagagacttacaagttattcggtcttaaa 190  Q
    ||||||| |||||| ||||||| ||||||||||||||| | || ||||| | |||| | || ||||||||||| ||| || |||| |||||  |||||||    
T  4172804 atgataaacatcatattcaacacctatcaatcattcatacatcttcatataatcatgtcaaactattcacaaa-agatttgcaagatattcaatcttaaa 4172706  T
Q  191 aatcatttccaacaaagttcgtctat 216  Q
     ||||||| | |||||||||||||||    
T  4172705 gatcattttcgacaaagttcgtctat 4172680  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 313
Target Start/End: Original strand, 21299148 - 21299244
Alignment:
Q  216 tttggtaaaaatccccatttttcggttaactctacagtaacaaggaagaccaaatcatttgcctcaactatgcatatacagtaatcaaatttatgtgc 313  Q
    |||||| ||||| | |||||| |||||||||||| || ||||||||| ||||| ||||||||||| |||||||||||||| |||||| |||| |||||    
T  21299148 tttggtgaaaattctcattttccggttaactctagagaaacaaggaa-accaactcatttgcctccactatgcatatacaataatcacatttgtgtgc 21299244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 313
Target Start/End: Original strand, 21304854 - 21304950
Alignment:
Q  216 tttggtaaaaatccccatttttcggttaactctacagtaacaaggaagaccaaatcatttgcctcaactatgcatatacagtaatcaaatttatgtgc 313  Q
    |||||| ||||| | |||||| |||||||||||| || ||||||||| ||||| ||||||||||| |||||||||||||| |||||| |||| |||||    
T  21304854 tttggtgaaaattctcattttccggttaactctagagaaacaaggaa-accaactcatttgcctccactatgcatatacaataatcacatttgtgtgc 21304950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 313
Target Start/End: Original strand, 21312691 - 21312787
Alignment:
Q  216 tttggtaaaaatccccatttttcggttaactctacagtaacaaggaagaccaaatcatttgcctcaactatgcatatacagtaatcaaatttatgtgc 313  Q
    |||||| ||||| | |||||| |||||||||||| || ||||||||| ||||| ||||||||||| |||||||||||||| |||||| |||| |||||    
T  21312691 tttggtgaaaattctcattttccggttaactctagagaaacaaggaa-accaactcatttgcctccactatgcatatacaataatcacatttgtgtgc 21312787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 39233 - 39114
Alignment:
Q  92 tgataagcatcatgttcaacaactatcaatcattcattcgtcctcataaagtcatattaatctattcacaaagagacttacaagttattcggtcttaaaa 191  Q
    |||||| |||||||||||||| |||| |||||||||| | || ||||| | |||||| || ||||||| ||| ||| || |||| ||||||||||||||     
T  39233 tgataaacatcatgttcaacacctattaatcattcatacatcttcatacaatcatatcaaactattcataaa-agattttcaaggtattcggtcttaaag 39135  T
Q  192 atcatttccaacaaagttcgt 212  Q
    ||||||| | |||||||||||    
T  39134 atcattttcgacaaagttcgt 39114  T

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Target: scaffold0028; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 313
Target Start/End: Complemental strand, 38925 - 38836
Alignment:
Q  223 aaaatccccatttttcggttaactctacagtaacaaggaagaccaaatcatttgcctcaactatgcatatacagtaatcaaatttatgtgc 313  Q
    ||||||| |||||| ||| |||||||| || ||||||||| ||||| ||||||||||| |||||||||||||| |||||| |||| |||||    
T  38925 aaaatccacattttccgggtaactctagagaaacaaggaa-accaactcatttgcctccactatgcatatacaataatcacatttgtgtgc 38836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 313
Target Start/End: Original strand, 16244950 - 16245055
Alignment:
Q  208 ttcgtctattt-ggtaaaaatccccatttttcggttaactctacagtaacaaggaagaccaaatcatttgcctcaactatgcatatacagtaatcaaatt 306  Q
    ||||||||||| ||| ||||| | |||||| ||||||  |||| || ||||||||| ||||| |||||| ||||||||||||||||||| |||||| |||    
T  16244950 ttcgtctatttcggtgaaaattcacattttccggttagttctaaagaaacaaggaa-accaactcatttacctcaactatgcatatacaataatcacatt 16245048  T
Q  307 tatgtgc 313  Q
    | |||||    
T  16245049 tgtgtgc 16245055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 325
Target Start/End: Original strand, 19430137 - 19430192
Alignment:
Q  270 tcatttgcctcaactatgcatatacagtaatcaaatttatgtgcggtcgcatatac 325  Q
    |||||||||||||| | ||||||||| |||||| |||||||||| || ||||||||    
T  19430137 tcatttgcctcaacaaagcatatacaataatcacatttatgtgcagttgcatatac 19430192  T

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