View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15607_high_7 (Length: 341)
Name: NF15607_high_7
Description: NF15607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15607_high_7 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0100 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 341
Target Start/End: Complemental strand, 137828 - 137501
Alignment:
| Q |
14 |
atactcatcatcgtcaatgggaagaaagccatgataatttccagttcttccatctcctgggtaggtatgccagttgttgcagaattgacggtgaatcatg |
113 |
Q |
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| T |
137828 |
atactcatcatcgtcaacgggaagaaagccatgataatttccaggtcttccatctcctgggtaggtatgccagttgttgcagaattgacggtgaatcatg |
137729 |
T |
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| Q |
114 |
cctgctggcatgagtctcttataccaagtgcagcgaaatctgaaaggagtggcgccccccaaaatatctactcgatagcgtgaaatacgcctagtcacca |
213 |
Q |
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| T |
137728 |
catgctggcatgaatcttttataccaagtgcagcgaaatctgaaaggagtggtaccccccaaaatatctactcgatagcgtgaaatacgcctagtcacca |
137629 |
T |
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| Q |
214 |
aaagggcccagaaatctttcagaagtttttcctcgtctagaggagacggagcagtagcccttatcagaaggtgaaagtactttgcactattcgagggggc |
313 |
Q |
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| T |
137628 |
aaagggcccagaaatctttcaaaagtttttcctcgtctagaggagacagagcagtagcccttatcagaaggtgaaagtacttagcactattcgagggggt |
137529 |
T |
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| Q |
314 |
agcctcaacatttgttaacaaacgctct |
341 |
Q |
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| T |
137528 |
agcctcagcatttgttaacaaacgctct |
137501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 23809335 - 23809017
Alignment:
| Q |
18 |
tcatcatcgtcaatgggaagaaagccatgataatttccagttcttccatctcctgggtaggtatgccagttgttgcagaattgacggtgaatcatgcctg |
117 |
Q |
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| T |
23809335 |
tcatcatcatcagtgggaagaaacccacgataattcccaggcctcccatctcctgggcaagaaagccagttattgcagaactgacggcgaatcatgccta |
23809236 |
T |
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| Q |
118 |
ctggcatgagtctcttataccaagtgcagcgaaatctgaaaggagtggcgccccccaaaatatctactcgatagcgtgaaatacgcctagtcaccaaaag |
217 |
Q |
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| T |
23809235 |
ctagcaggggcctcttataccaagtgcagcgaaatctgaaaggagtggtgccccccaaaatatccactcgataatgtgaaatacgcctagtcaccagaag |
23809136 |
T |
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| Q |
218 |
ggcccagaaatctttcagaagtttttcctcgtctagaggagacggagcagtagcccttatcagaaggtgaaagtactttgcactattcgagggggcagcc |
317 |
Q |
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| T |
23809135 |
ggcccagaaatatttgaagagttgttcctcatctataggagacggagcagtagcctttatcaaaatgtggaagtatttagcactattcgagggagcagcc |
23809036 |
T |
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| Q |
318 |
tcaacatttgttaacaaac |
336 |
Q |
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| T |
23809035 |
tcaacattctttaacaaac |
23809017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 127 - 337
Target Start/End: Original strand, 3901 - 4111
Alignment:
| Q |
127 |
gtctcttataccaagtgcagcgaaatctgaaaggagtggcgccccccaaaatatctactcgatagcgtgaaatacgcctagtcaccaaaagggcccagaa |
226 |
Q |
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| T |
3901 |
gtctcttataccaagtgcagcggaatctgaaaggtgtggtgtcccccaatatatctaatcgatattccgaaacgcgcctagtcatcaggagggcctaaaa |
4000 |
T |
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| Q |
227 |
atctttcagaagtttttcctcgtctagaggagacggagcagtagcccttatcagaaggtgaaagtactttgcactattcgagggggcagcctcaacattt |
326 |
Q |
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| T |
4001 |
atccttgaaaaattgttcctcatcgatgagagatggagcagtggctttgatcagcaggtgaaaatacttagcgctgttcgagggggcagcactagcattt |
4100 |
T |
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| Q |
327 |
gttaacaaacg |
337 |
Q |
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| T |
4101 |
gttaacaaacg |
4111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 20599127 - 20599051
Alignment:
| Q |
105 |
tgaatcatgcctgctggcatgagtctcttataccaagtgcagcgaaatctgaaaggagtggcgccccccaaaatatc |
181 |
Q |
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| T |
20599127 |
tgaaccatgcccgcaggcatggatcttttgtaccaggtgcagcgcaatctgaacggagtggcacctcccaaaatatc |
20599051 |
T |
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