View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15607_high_8 (Length: 339)
Name: NF15607_high_8
Description: NF15607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15607_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 36515350 - 36515020
Alignment:
| Q |
1 |
attatggtccttgcaaaaatatatattcaatggagggaatatttatcaacttattggaaaacaatactttgtttcggactcagaatccaaatgaagctca |
100 |
Q |
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| T |
36515350 |
attatggtccttgcaaaaatatatattcaatggagggaatatttatcaacttattggaaaacaatactttgtttcggactcagaatccaaatgaagctca |
36515251 |
T |
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| Q |
101 |
tgtctactttcttccatttagtgttgttatgatccttgagcatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattgt |
200 |
Q |
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| T |
36515250 |
tgtctactttcttccatttagtgttgttatgatccttgagcatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattat |
36515151 |
T |
|
| Q |
201 |
gttcatatcatatcacacaaatatgcttattggaatagaagttatggagctgaccatttcatgctttcttgtcatgattgggtacttccttgaccatttt |
300 |
Q |
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| T |
36515150 |
gttcatatcatatcacacaaatatgcttattggaatagaagttatggagctgaccatttcatgctttcttgtcatgattgggtacttccttgaccatttt |
36515051 |
T |
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| Q |
301 |
tgtgtccagtgtttgtgtccgtatctgtgct |
331 |
Q |
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| T |
36515050 |
tgtgtccagtgtctgtgtccgtatctgtgct |
36515020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 3 - 331
Target Start/End: Original strand, 36805878 - 36806206
Alignment:
| Q |
3 |
tatggtccttgcaaaaatatatattcaatggagggaatatttatcaacttattggaaaacaatactttgtttcggactcagaatccaaatgaagctcatg |
102 |
Q |
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| T |
36805878 |
tatggtccttgcaaaaatatatattcaatggagggaatatttatcaacttattggaaaacaatactttgtttcggactcgtaatccaaatgaagctcatg |
36805977 |
T |
|
| Q |
103 |
tctactttcttccatttagtgttgttatgatccttgagcatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattgtgt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36805978 |
cctactttcttccatttagtgttgttatgatccttgaacatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattatgt |
36806077 |
T |
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| Q |
203 |
tcatatcatatcacacaaatatgcttattggaatagaagttatggagctgaccatttcatgctttcttgtcatgattgggtacttccttgaccatttttg |
302 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
36806078 |
tcatatcatatcacacaaatatgcatattggaatagaagttatggagctgatcatttcatgctttcttgtcatgattgggtactttcttgaccatttctg |
36806177 |
T |
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| Q |
303 |
tgtccagtgtttgtgtccgtatctgtgct |
331 |
Q |
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|||| |||| |||||||||||||||||| |
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| T |
36806178 |
tgtctggtgtctgtgtccgtatctgtgct |
36806206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 284
Target Start/End: Original strand, 41756718 - 41756757
Alignment:
| Q |
245 |
tggagctgaccatttcatgctttcttgtcatgattgggta |
284 |
Q |
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| T |
41756718 |
tggagctgatcatttcatgctttcttgccatgattgggta |
41756757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 41764634 - 41764699
Alignment:
| Q |
219 |
aaatatgcttattggaatagaagttatggagctgaccatttcatgctttcttgtcatgattgggta |
284 |
Q |
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|||||| | |||||||| ||||| |||||||||| |||||||| ||| |||| |||||||||||| |
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| T |
41764634 |
aaatatccctattggaaccgaagtcatggagctgatcatttcatacttgcttgccatgattgggta |
41764699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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