View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15608_low_2 (Length: 560)
Name: NF15608_low_2
Description: NF15608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15608_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 18 - 542
Target Start/End: Original strand, 26283115 - 26283640
Alignment:
| Q |
18 |
atcaaaagctattcctcaaagcaatcaaagaaactcttcagggaaaggtaagatgcaagaatccaacaatgatcaagtgaaattgaagcctttgcattgg |
117 |
Q |
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| T |
26283115 |
atcaaaagctattcctcaaagcaatcaaagaaactcttcagggaaaggcatgatgcaagaatccaacaatgatcaagtgaaattgaagcctttgcattgg |
26283214 |
T |
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| Q |
118 |
gataaagtgaacactaatgctgctgatcattccatggtttgggacaaagtcgatcgcggttcgttcaggtaaa-ccctaatatgttgaatgttgttaaat |
216 |
Q |
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| T |
26283215 |
gataaagtgaacactaatgctgctgatcattccatggtttgggacaaagtcgatcgcggttcgttcaggtaaaaccctaatatgttgaatgttgttaaat |
26283314 |
T |
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| Q |
217 |
aaatttagatattattttagtaattttcttcttcgtcgggatttgaacttgtgtttctaaattcatttctttagggttgatcaagatcttatggaagctc |
316 |
Q |
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| T |
26283315 |
aaatttagttattattttagtaattttcttcttcatcgggaattgaacttgtgtttctaaattcatttctttagggttgatcaagatcttatggaagctc |
26283414 |
T |
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| Q |
317 |
tctttggttatgttgcaacaaaccgaaaatcacctcagcaaaagactcattcaacaactccaagcaatgatgcctcaacaaatattttccttcttgatcc |
416 |
Q |
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| T |
26283415 |
tctttggttatgttgcaacaaaccgaaaatcacctcagcaaaagactcattcaacaactccaagcaatgatgcctcaacaaatattttccttcttgatcc |
26283514 |
T |
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| Q |
417 |
tagaaaatcacagaacattgctattgtgttgaaatcattagccgtctcacgaggcgaaattcttgatgcactcattgacggaaaaggcctaaatgcagat |
516 |
Q |
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| T |
26283515 |
tagaaaatcacagaacattgctattgtgttgaaatcactagccgtcccacgaggcgaaattcttgatgcactcattgatggaaaaggcctaaatgcagat |
26283614 |
T |
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| Q |
517 |
acacttgaaaagctttctagagtttc |
542 |
Q |
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| T |
26283615 |
acacttgaaaagctttctagactttc |
26283640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 537
Target Start/End: Original strand, 15945084 - 15945254
Alignment:
| Q |
367 |
tcaacaactccaagcaatgatgcctcaacaaatattttccttcttgatcctagaaaatcacagaacattgctattgtgttgaaatcattagccgtctcac |
466 |
Q |
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| T |
15945084 |
tcaacaagtccaagcagggatgcatcaacaaatgcttttattcttgaccctagaaaatcacaaaacactgctatagttttgaaatctcttgcagtctcgc |
15945183 |
T |
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| Q |
467 |
gaggcgaaattcttgatgcactcattgacggaaaaggcctaaatgcagatacacttgaaaagctttctaga |
537 |
Q |
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| T |
15945184 |
gaaaagaaatcatcgatgcacttgttgatggtcaaggccttaatgcagatacaattgaaaagctgtctaga |
15945254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 189
Target Start/End: Original strand, 15944822 - 15944916
Alignment:
| Q |
92 |
aagtgaaattgaagcctttgcattgggataaagtgaacactaatgctgctgatcattccatggtttgggacaaagtcgatcgcggttcgttcaggtaa |
189 |
Q |
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|||| |||||||| || |||||||||||||| ||||| |||||| || |||||| |||||||| ||||||||| |||| |||||||| || |||||| |
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| T |
15944822 |
aagtaaaattgaaaccattgcattgggataaggtgaatactaat-ct--tgatcactccatggtgtgggacaaaatcgaccgcggttcttttaggtaa |
15944916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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