View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15609_low_1 (Length: 398)
Name: NF15609_low_1
Description: NF15609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15609_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 99 - 379
Target Start/End: Complemental strand, 27642463 - 27642171
Alignment:
| Q |
99 |
taatatgtttgaatcttgttgacctccggc-gataatttctttatcatatcaatacaattttttatcttttctagggtgaaaaggaaaatatgtatgtgg |
197 |
Q |
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| T |
27642463 |
taatatgtttgaatgttgttgacctccggctgataatttctttattatatcaatacaattttttatcttttctagggtgaaaaggaaaatatgtatgtgg |
27642364 |
T |
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| Q |
198 |
gttccaccatgttct----------tattaaataaacgaggaaacatataattttgtnnnnnnnnntt-attatatataatattttttcacctcataaac |
286 |
Q |
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| T |
27642363 |
gttccaccatgttctctcatgttcgtattaaataaacgaggaaacatataattttgtaaaaaaaaaatgattatatataatattttataacctcagaaac |
27642264 |
T |
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| Q |
287 |
aacaaaacttacaaggtttaaggtatgtgttcagtttgccttataatgtttgacgagcatgagttccttttacatgacgtgggatatgctccc |
379 |
Q |
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| T |
27642263 |
aacaaaacttataaggtttacggtatgtgttcagtttgccttataatgtttgacgagcatgagttccttttacatgacgtgggatatgctccc |
27642171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 27643036 - 27642959
Alignment:
| Q |
3 |
gtaaagatgtgaaagtgttttgaaattatcgtgatattgagtctatttcaatatttttcttcaatactatcaaagtat |
80 |
Q |
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| T |
27643036 |
gtaaagatgtgaaagtgttttgaaattatcgtgatattgagtctatttcaatatttttcttcaatactatcaaagtat |
27642959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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