View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1561-INSERTION-4 (Length: 456)
Name: NF1561-INSERTION-4
Description: NF1561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1561-INSERTION-4 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 9 - 423
Target Start/End: Complemental strand, 47837000 - 47836583
Alignment:
| Q |
9 |
aatttgccacatttttattgcaatataaagaagattctgatcataaacagagatttagatttgagttcatgaggatgattgagaaatagttgtgatgttg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47837000 |
aatttgccacatttttattgcaatataaagaagattctgatcataaacagcgatttagatttgagttcatgaggatgattgagaaatagttgtgatgttg |
47836901 |
T |
|
| Q |
109 |
cggttaggtctcttccttttcttatggtagctaactcctctagcctttgactgaaaatcacgaacatcacgcaagtaaaacctaacagcaccatcaccaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47836900 |
cggttaggtctcttccttttcttatggtagctaactcctctagcctttgactggaaatcacgaacatcacgcaagtaaaacctaacagcaccatcaccaa |
47836801 |
T |
|
| Q |
209 |
aagggttact---tccaccattgatctcttgatcatatgcggcgcggaggcgaccgacaagagcatcaaggctaccccacgcctgacggagaggacaagc |
305 |
Q |
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| T |
47836800 |
aaggattactacttccaccattgatctcttgatcatatgcggcgcggaggcgaccgacaagagcatcaaggctaccccacgcctgacggagaggacaagc |
47836701 |
T |
|
| Q |
306 |
acatggagatggagggtttggcatcccaaagaaaggacaagttggattgtgaaccttagtcttcccaaattgatcaagatagtgaaggaattcaagaaca |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47836700 |
acatggagatggagggtttggcatcccaaagaaaggacaagttggattgtgaaccttagtcttcccaaattgatcaagatagtgaaggaattcaagaaca |
47836601 |
T |
|
| Q |
406 |
tgtgttccattgcgcatt |
423 |
Q |
| |
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||||||||||||| |||| |
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| T |
47836600 |
tgtgttccattgcacatt |
47836583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 388
Target Start/End: Complemental strand, 35608766 - 35608631
Alignment:
| Q |
253 |
aggcgaccgacaagagcatcaaggctaccccacgcctgacggagaggacaagcacatggagatggagggtttggcatcccaaagaaaggacaagttggat |
352 |
Q |
| |
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|||||||||| ||||| || || ||||||||||| ||||| |||||||| | ||| |||| ||| || || || || |||||||||||||||| | | |
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| T |
35608766 |
aggcgaccgatgagagcgtcgagactaccccacgcttgacgaagaggacatggacaaggagctggtggattagggatgccaaagaaaggacaaggatggt |
35608667 |
T |
|
| Q |
353 |
tgtgaaccttagtcttcccaaattgatcaagatagt |
388 |
Q |
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||||||| || || |||||||| || |||||||||| |
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| T |
35608666 |
tgtgaactttggttttcccaaactggtcaagatagt |
35608631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 216
Target Start/End: Complemental strand, 35608910 - 35608806
Alignment:
| Q |
112 |
ttaggtctcttccttttcttatggtagctaactcctctagcctttgactgaaaatcacgaacatcacgcaagtaaaacctaacagcaccatcaccaaaag |
211 |
Q |
| |
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||||| |||||||||||||| | |||||||| ||||||| |||| |||||||||||||| || | || |||| |||||||| || | |||||||| |
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| T |
35608910 |
ttaggcctcttccttttcttttcatagctaacccctctagattttgcttgaaaatcacgaacgtcccttaaataaatcctaacagaacgagaaccaaaag |
35608811 |
T |
|
| Q |
212 |
ggtta |
216 |
Q |
| |
|
||||| |
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|
| T |
35608810 |
ggtta |
35608806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Complemental strand, 35814626 - 35814573
Alignment:
| Q |
354 |
gtgaaccttagtcttcccaaattgatcaagatagtgaaggaattcaagaacatg |
407 |
Q |
| |
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||||||||||||||| |||||||||||||| || |||| || ||||||||||| |
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| T |
35814626 |
gtgaaccttagtcttaccaaattgatcaaggtaacgaagaaaatcaagaacatg |
35814573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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