View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15610_high_1 (Length: 543)
Name: NF15610_high_1
Description: NF15610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15610_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 17 - 492
Target Start/End: Complemental strand, 3616421 - 3615944
Alignment:
| Q |
17 |
cttcatatcttcttctcccaaattcatcacacaccaccatcataaattcatccctacacctccatcgctgaaaaagatattcataaattcatgaattcat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||| |
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| T |
3616421 |
cttcatatcttcttctcccaaattcatcagacaccgccatcataaattcatccatacaccaccatcactgaaaaagat--tcataaattcatgaattcat |
3616324 |
T |
|
| Q |
117 |
aaaactcataaacccattaaaacannnnnnnnn----ggttcctttttgaaacaagatttgtatttacgattaacccataaaaaatattattattaattc |
212 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
3616323 |
aaaactcataaacccattaaaacatttttttttttttggttccttttagaaacaagattagtatttacaattaacccataaaaaatattattattaattc |
3616224 |
T |
|
| Q |
213 |
tggttgttattaactattgttcatcgatctacaaccctttcacaaaaaccaattcatgttttctctctcaacaaacagtacataatttctcttatcactc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3616223 |
tggttgttattaactattgttcatcgatctacaaccctttcacaaaaaccaattcatgttttctctctcaacaaacagtacataatttctcttatcactc |
3616124 |
T |
|
| Q |
313 |
actgtcgccgtttcctttctgcttcttcccttccttctctctgtcgagcacagaatcatcaatagcatcctctttcatcgtcctttatttaatttacaag |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3616123 |
actgtcgccgtttcctttctgcttcttcccttccttctctctgtcgagcacagaatcatcaatagcatcctctttcatcgtcctttatttaatttagaag |
3616024 |
T |
|
| Q |
413 |
ggtcatataatgtttaaaatccatcgtcccttatatgtattttcatcatcctttatttttccctgttggagttctaagaa |
492 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3616023 |
ggtcatataatgtttaaaatccattgtcccttatatgtattttcatcatcctttatttttccctgttggagttctaagaa |
3615944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 492
Target Start/End: Complemental strand, 52077693 - 52077229
Alignment:
| Q |
17 |
cttcatatcttcttctcccaaattcatcacacaccaccatcataaattcatccctacacctccatcgctgaaaaagatattcataaattcatgaattcat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| |||| |
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| T |
52077693 |
cttcatatcttcttctcccaaattcatcacacaccaccatcataaattcatccctacaccaccatcactgaaaaagaaattcataaattcatgaactcat |
52077594 |
T |
|
| Q |
117 |
aaaactcataaacccattaaaacannnnnnnnnggttcctttttgaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggt |
216 |
Q |
| |
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||||| ||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52077593 |
aaaac--------ccattaaaaaaaaaaact--ggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggc |
52077504 |
T |
|
| Q |
217 |
tgttattaactattgttcatcgatctacaaccctttcacaaaaaccaattcatgttttctctctcaacaaacagtacataatttctcttatcactcactg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52077503 |
tgttattaactattgttcatcgatctacaaccctttcacaaaa-ccaattcatgttttctctctcaacaaacagtatataatttctcttatcactcacta |
52077405 |
T |
|
| Q |
317 |
tcgccgtttcctttctgcttcttcccttccttctctctgtcgagcacagaatcatcaatagcatcctctttcatcgtcctttatttaatttacaagggtc |
416 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52077404 |
tcgtcgtttcctttctgcttcttcccttccttctctctgtcgagcacagaatcatcaatagcgtcctctttcatcgtcctttatttaatttacaagggtc |
52077305 |
T |
|
| Q |
417 |
atataatgtttaaaatccatcgtcccttatatgtattttcatcatcctttatttttccctgttggagttctaagaa |
492 |
Q |
| |
|
||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52077304 |
atataataattaaaatcaattgtcccttatatgtattttcatcatcctttatttttccctgttggagttctaagaa |
52077229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 12666985 - 12666904
Alignment:
| Q |
40 |
tcatcacacaccaccatcataaattcatccctacacctccatcgctgaaaaagatattcataaattcatgaattcataaaac |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||| | |||||||| ||||||||||||||||||||||||||| |
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| T |
12666985 |
tcatcacacaccaccatcataaattcatcactacaccaccatcacagaaaaagaaattcataaattcatgaattcataaaac |
12666904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 105 - 492
Target Start/End: Original strand, 16756528 - 16756909
Alignment:
| Q |
105 |
tcatgaattcataaaactcataaacccattaaaacannnnnnnnnggttcctttttgaaacaagatttgtatttacgattaacccataaaaaatattatt |
204 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| | |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16756528 |
tcataaattcataaaacccataaacccattaaaaaaaatt-----ggttccttttagaatcaagatttgtatttacgattaacccataaaaaatattatt |
16756622 |
T |
|
| Q |
205 |
attaattctggttgttattaactattgttcatcgatctacaaccctttcacaaaaaccaattcatgttttctctctcaacaaacagtacataatttctct |
304 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
16756623 |
attaattttggttgttattaactattgttcatcgatctacaaccctttcacaaaa-ccaattcatgttttctctctcaacaaacagtatataatttctct |
16756721 |
T |
|
| Q |
305 |
tatcactcactgtcgccgtttcctttctgcttcttcccttccttctctctgtcgagcacagaatcatcaatagcatcctctttcatcgtcctttatttaa |
404 |
Q |
| |
|
||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
16756722 |
tatcactcactatcgttgtttccttcctgcttcttcccttccttctctctgtcgagcacaaaatcatcaataacatcctctttcatcgtcctttatttaa |
16756821 |
T |
|
| Q |
405 |
tttacaagggtcatataatgtttaaaatccatcgtcccttatatgtattttcatcatcctttatttttccctgttggagttctaagaa |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16756822 |
tttacaagggtcatataatgtttaaaatccattgtcccttatatgtattttcatcatcctttatttttccctgttggagttctaagaa |
16756909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 667350 - 667413
Alignment:
| Q |
58 |
ataaattcatccctacacctccatcgctgaaaaagatattcataaattcatgaattcataaaac |
121 |
Q |
| |
|
||||||||||| || |||| ||||| | |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
667350 |
ataaattcatcactgcaccaccatcacagaaaaagaaattcataaatttatgaattcataaaac |
667413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 67
Target Start/End: Original strand, 16756485 - 16756516
Alignment:
| Q |
36 |
aaattcatcacacaccaccatcataaattcat |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
16756485 |
aaattcatcacacaccaccatcataaattcat |
16756516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 360
Target Start/End: Original strand, 7309442 - 7309553
Alignment:
| Q |
246 |
accctttcacaaaaaccaattcatgttttctctctcaacaaacagtacataatttctcttatcactcactgtcgccgtttcctttctgcttcttcccttc |
345 |
Q |
| |
|
|||||||||||||| | | ||||||||||||| |||||||| |||| ||||||||||||| ||| ||| || |||||||||||| |||||||| ||| |
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|
| T |
7309442 |
accctttcacaaaa-caagttcatgttttctc--tcaacaaaaagtatataatttctcttaccaccaactctcaccgtttcctttcagcttcttcttttc |
7309538 |
T |
|
| Q |
346 |
cttctctctgtcgag |
360 |
Q |
| |
|
||||||||||||||| |
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|
| T |
7309539 |
cttctctctgtcgag |
7309553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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