View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15610_high_2 (Length: 471)
Name: NF15610_high_2
Description: NF15610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15610_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 16 - 457
Target Start/End: Complemental strand, 42375658 - 42375216
Alignment:
| Q |
16 |
attttgaggtatgaatattatcatttttaatcattttagaatgtgcaattattgattatcttatcccctgtgaaagaaagaagtcggtactcatgcatga |
115 |
Q |
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| T |
42375658 |
attttgaggtatgaatattatcatttttaatcattttagaatgtgcaattattgattatcttatcccctgtgaaagaaagaagtcggtactcatgcatga |
42375559 |
T |
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| Q |
116 |
ttatgtaattgatttaattcatctgaccaatatatgtatttgattatttcctttgacttcaatgcatgaatattattacctctttgatattttagggaac |
215 |
Q |
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| T |
42375558 |
ttatgtaattgatttaattcatctgaccaatatatgtatttgattatttcctttgacttcaatgcatgaatattattacctctttgatattttagggaac |
42375459 |
T |
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| Q |
216 |
caacatttcttaaatatataaaaacagag--tttatgataaccaaagactctttcgattataaaatcatgagaaccaaacataatttacaagacttgttg |
313 |
Q |
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| T |
42375458 |
caacatttcttaaatatataaaaacagagtttttatgataaccaaagactctttcgattataaaatcatgagaaccaaacataatttacaagacttgttg |
42375359 |
T |
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| Q |
314 |
agctgtcagatttatcatcctctcttagagtaaaaggataaacatcgttggcatggcatggcattgcttttcattaaattaaaaaattgcaaattttgac |
413 |
Q |
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| T |
42375358 |
agctgtcagatttatcatcct-tcttagagtaaaaggataaacatcgttggcatggcatggcatggcattgcttttcattaaaaaattgcaaattttgac |
42375260 |
T |
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| Q |
414 |
cgctgctaattaacgacagtgttagcttgagggagtcttcatct |
457 |
Q |
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| T |
42375259 |
cgctgctaattaacgacagtgttagcttgagggagtcttcatct |
42375216 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 38408952 - 38408909
Alignment:
| Q |
16 |
attttgaggtatgaatattatcatttttaatcattttagaatgt |
59 |
Q |
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| T |
38408952 |
attttgaggggtaaatattatcatttttaatcattttagaatgt |
38408909 |
T |
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