View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15610_low_3 (Length: 426)
Name: NF15610_low_3
Description: NF15610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15610_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 417
Target Start/End: Original strand, 15800885 - 15801285
Alignment:
| Q |
17 |
aaatagttggcaatgttttgaaaaaactagacaagaaatacttgcctatcccagattttccagtaggattagaatcccgtgcggaaaaattgattcagtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15800885 |
aaatagttggcaatgttttgaaaaaactagacaagaaatacttgcctatcccagattttccagtaggattagaatcccgtgcggaaaaattgattcagtt |
15800984 |
T |
|
| Q |
117 |
tctaagaaagaatacaagaggagtttgtttagtagggatttggggaatgggagggattggcaaaagcaccattgccaaagtcgtctacaataatctttgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15800985 |
tctaagaaagaatacaagaggagtttgtttagtagggatttggggaatgggagggattggcaaaagcaccattgccaaagtcgtctacaataatctttgt |
15801084 |
T |
|
| Q |
217 |
tatgaatttgaagatcaaagcttccttgctaatattagacaagtttgggagaaagagagggggcaaattgatttacaagaacaacttctttcagatatcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15801085 |
tatgaatttgaagatcaaagcttccttgctaatattagacaagtttgggagaaagagagggggcaaattgatttacaagaacaacttctttcagatatcc |
15801184 |
T |
|
| Q |
317 |
ttaaaacaagaaatgtaaaggtgcataatgttgagtggggaaaagctatgatcaatgaacgactttgcacgaaacgggcactcgttatacttgatgatgt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15801185 |
ttaaaacaagaaatgtaaaggtgcataatgttgagtggggaaaagctatgatcaatgaacgactttgcacgaaacgggcacttgttatacttgatgatgt |
15801284 |
T |
|
| Q |
417 |
c |
417 |
Q |
| |
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| |
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|
| T |
15801285 |
c |
15801285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 31 - 416
Target Start/End: Original strand, 3312765 - 3313150
Alignment:
| Q |
31 |
gttttgaaaaaactagacaagaaatacttgcctatcccagattttccagtaggattagaatcccgtgcggaaaaattgattcagtttctaagaaagaata |
130 |
Q |
| |
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||||||| |||||||||||| |||||||| ||| |||| ||||||||||| ||| ||||||||||||||||| ||| |||| || | ||||| | ||| |
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| T |
3312765 |
gttttgacaaaactagacaaaaaatacttacctctcccggattttccagttggactagaatcccgtgcggaacaatctattcggtatttaagacataatt |
3312864 |
T |
|
| Q |
131 |
caagaggagtttgtttagtagggatttggggaatgggagggattggcaaaagcaccattgccaaagtcgtctacaataatctttgttatgaatttgaaga |
230 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3312865 |
cagatggagtttgtttagtagggatttggggaatgggagggattggcaaaagcaccattgccaaagtcatctacaataatctttgttatgaatttgaaga |
3312964 |
T |
|
| Q |
231 |
tcaaagcttccttgctaatattagacaagtttgggagaaagagagggggcaaattgatttacaagaacaacttctttcagatatccttaaaacaagaaat |
330 |
Q |
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| T |
3312965 |
tcaaagcttccttgctaatattagagaagtttgggagaaagataggggtagaatcgatttacaagaacaacttctttcagatatcctcaaaacaaggaag |
3313064 |
T |
|
| Q |
331 |
gtaaaggtgcataatgttgagtggggaaaagctatgatcaatgaacgactttgcacgaaacgggcactcgttatacttgatgatgt |
416 |
Q |
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|||||||||||| |||||||| |||||||||||||| || ||||||||| ||| ||||||||||| ||| ||||||||||||| |
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| T |
3313065 |
ataaaggtgcatagtgttgagtttggaaaagctatgattaaggaacgacttgtcacaaaacgggcacttgttgtacttgatgatgt |
3313150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 31 - 371
Target Start/End: Original strand, 3362138 - 3362478
Alignment:
| Q |
31 |
gttttgaaaaaactagacaagaaatacttgcctatcccagattttccagtaggattagaatcccgtgcggaaaaattgattcagtttctaagaaagaata |
130 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||| | |||||||||| ||| ||||||||| ||||||||||||| | ||||| ||| ||||| | |||| |
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| T |
3362138 |
gttttgaaaaatctagacaataaatacttacctctgccagattttcaagttggattagaaccccgtgcggaaaagtcgattcgatttttaagacaaaata |
3362237 |
T |
|
| Q |
131 |
caagaggagtttgtttagtagggatttggggaatgggagggattggcaaaagcaccattgccaaagtcgtctacaataatctttgttatgaatttgaaga |
230 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| | |
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| T |
3362238 |
caagaggagtttgtttagtagggatttgggggatgggggggattggcaaaagcactattgccaaagtcatctacaatgatctttgttatgaatttgaaaa |
3362337 |
T |
|
| Q |
231 |
tcaaagcttccttgctaatattagacaagtttgggagaaagagagggggcaaattgatttacaagaacaacttctttcagatatccttaaaacaagaaat |
330 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
3362338 |
tcaaagcttccttgctaatattagagaagtttgggagaaagataggggcagaatcgatttacaagaacaatttctttcagatatcctcaaaacaagaaag |
3362437 |
T |
|
| Q |
331 |
gtaaaggtgcataatgttgagtggggaaaagctatgatcaa |
371 |
Q |
| |
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||||||||| || ||||||| |||||| |||||||||| |
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| T |
3362438 |
ataaaggtgcttagtgttgagcaaggaaaaactatgatcaa |
3362478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 31 - 381
Target Start/End: Complemental strand, 3393745 - 3393395
Alignment:
| Q |
31 |
gttttgaaaaaactagacaagaaatacttgcctatcccagattttccagtaggattagaatcccgtgcggaaaaattgattcagtttctaagaaagaata |
130 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||| | ||| |||||| ||| |||||| || ||||||||||||| ||||| ||| ||||| | |||| |
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| T |
3393745 |
gttttgaaaaatctagacaaaaaatacttacctctgccaaattttcaagttggattaaaaccccgtgcggaaaagccgattcgatttttaagacaaaata |
3393646 |
T |
|
| Q |
131 |
caagaggagtttgtttagtagggatttggggaatgggagggattggcaaaagcaccattgccaaagtcgtctacaataatctttgttatgaatttgaaga |
230 |
Q |
| |
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||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| | |||||| |||||||||||||||||||||| |
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|
| T |
3393645 |
caagaaaagtttgtttagtagggatttgggggatgggggggattggcaaaagcactattgccaaagtcatatacaatgatctttgttatgaatttgaaga |
3393546 |
T |
|
| Q |
231 |
tcaaagcttccttgctaatattagacaagtttgggagaaagagagggggcaaattgatttacaagaacaacttctttcagatatccttaaaacaagaaat |
330 |
Q |
| |
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|||||||||| |||||||||||||| |||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3393545 |
tcaaagcttcgttgctaatattagagaagtttgggagaaagataggggcagaatcgatttacaagaacaacttctttcagatatcctgaaaacaagaaag |
3393446 |
T |
|
| Q |
331 |
gtaaaggtgcataatgttgagtggggaaaagctatgatcaatgaacgactt |
381 |
Q |
| |
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||||||||| || ||||||| ||||||||||||||||| |||||||| |
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|
| T |
3393445 |
ataaaggtgcttagtgttgagcaaggaaaagctatgatcaagcaacgactt |
3393395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 25567853 - 25567913
Alignment:
| Q |
149 |
tagggatttggggaatgggagggattggcaaaagcaccattgccaaagtcgtctacaataa |
209 |
Q |
| |
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||||||| ||||| ||||||||||||||||||| ||||||||| |||| | | |||||||| |
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| T |
25567853 |
tagggatgtggggtatgggagggattggcaaaaccaccattgcaaaagccatttacaataa |
25567913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 5075883 - 5075823
Alignment:
| Q |
149 |
tagggatttggggaatgggagggattggcaaaagcaccattgccaaagtcgtctacaataa |
209 |
Q |
| |
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||||||||||||| ||||| |||||||| |||| ||||||||| |||| | | |||||||| |
|
|
| T |
5075883 |
tagggatttggggtatgggtgggattggtaaaaccaccattgcaaaagccatttacaataa |
5075823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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