View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15611_high_12 (Length: 395)
Name: NF15611_high_12
Description: NF15611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15611_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 3215311 - 3214958
Alignment:
| Q |
20 |
cttcgcatgcgtataaactctagaacaaacttgtgatctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacct |
119 |
Q |
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| T |
3215311 |
cttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcaaatgcttgcaaaggcaagacaac-ttcgtgttgaattgcgtgctacct |
3215213 |
T |
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| Q |
120 |
cgtttgataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgtcaatcagcactt |
219 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215212 |
cgtttgataatcgtacggtgcaagagtatctcattcatactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgtcaatcagcactt |
3215113 |
T |
|
| Q |
220 |
agatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatcgctg |
319 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3215112 |
agatgttattttggaaggtttaccacatggttatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctg |
3215013 |
T |
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| Q |
320 |
ctaattgctcatgaaactcgtcttgacaaattcaagaagaaaactcttgatgatg |
374 |
Q |
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| T |
3215012 |
ctaattgctcatgaaactcgtcttgacaagttcaagaagaaaactcttgatgatg |
3214958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 375
Target Start/End: Complemental strand, 32460826 - 32460471
Alignment:
| Q |
20 |
cttcgcatgcgtataaactctagaacaaacttgtgatctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacct |
119 |
Q |
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|||||||||||||| |||| |||||||||||||| ||||||||| |||||||||| |||||||||||| || | ||||||||| |||| |||| | |
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| T |
32460826 |
cttcgcatgcgtatgaacttcggaacaaacttgtgacctattttcacaagcagatgcgtgcaaaggcaaggcagt-tacgtgttgaactgcgttctactt |
32460728 |
T |
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| Q |
120 |
cgtttgataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgctt-caattgatgatccaattcctgtcaatcagcact |
218 |
Q |
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| ||||||||||||||||||| ||| |||| |||| | ||||||| | || || |||||||||| | |||| ||||||| |||| | | |||||| | |
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| T |
32460727 |
ctcttgataatcgtacggtacaggagcatcttcttcgcattcgcaatttaattgataatcttgctttccattggtgatccagttcccattactcagcatt |
32460628 |
T |
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| Q |
219 |
tagatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatcgct |
318 |
Q |
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| T |
32460627 |
tagatgtaattttagaaggtttaccacaagagtatagtccagtgatttcagttgttgaaagcaaatttgacactattgatattgatgaggtagagtctct |
32460528 |
T |
|
| Q |
319 |
gctaattgctcatgaaactcgtcttgacaaattcaagaagaaaactcttgatgatgt |
375 |
Q |
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| ||||||||||||| |||||||||||||| ||||||||||| ||| |||||||||| |
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| T |
32460527 |
gttaattgctcatgagactcgtcttgacaagttcaagaagaagactattgatgatgt |
32460471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 194 - 357
Target Start/End: Complemental strand, 36399611 - 36399448
Alignment:
| Q |
194 |
gatccaattcctgtcaatcagcacttagatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgtta |
293 |
Q |
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|||||| ||||||| ||||| || || ||||| ||||| ||||||||||| || | | |||||| ||||| ||||| || || || || |||||||||| |
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| T |
36399611 |
gatccagttcctgttaatcaacatttggatgtgattttagaaggtttaccgcaagattttagtcctgttatatctgtagtggaaagcaaatttgatgtta |
36399512 |
T |
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| Q |
294 |
ttgacatagatgaggttgaatcgctgctaattgctcatgaaactcgtcttgacaaattcaagaa |
357 |
Q |
| |
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||||| | || || ||||| || || || ||||||||||||| |||||||| ||||||||||| |
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| T |
36399511 |
ttgacgttgacgaagttgagtctcttcttcttgctcatgaaacacgtcttgataaattcaagaa |
36399448 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 357
Target Start/End: Complemental strand, 52665923 - 52665850
Alignment:
| Q |
284 |
tttgatgttattgacatagatgaggttgaatcgctgctaattgctcatgaaactcgtcttgacaaattcaagaa |
357 |
Q |
| |
|
||||||||||||||||| || || ||||| || || || ||||||||||||| |||||||| ||||||||||| |
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| T |
52665923 |
tttgatgttattgacattgacgaagttgagtctcttcttcttgctcatgaaacacgtcttgataaattcaagaa |
52665850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 357
Target Start/End: Complemental strand, 24789452 - 24789296
Alignment:
| Q |
201 |
ttcctgtcaatcagcacttagatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacat |
300 |
Q |
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||||||| ||||| || || ||||| ||||| |||||||||||||| | | |||||| |||| | ||| || || || || ||||||||||||||| | |
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| T |
24789452 |
ttcctgttaatcaacatttggatgtgattttagaaggtttaccacaagattttagtcctattatatttgtagtggaaagcaaatttgatgttattgacgt |
24789353 |
T |
|
| Q |
301 |
agatgaggttgaatcgctgctaattgctcatgaaactcgtcttgacaaattcaagaa |
357 |
Q |
| |
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|| || ||||| || || || || |||||||||| |||||||| ||||||||||| |
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| T |
24789352 |
tgacgaagttgagtctcttcttcttactcatgaaacacgtcttgataaattcaagaa |
24789296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 351
Target Start/End: Complemental strand, 44143567 - 44143341
Alignment:
| Q |
128 |
aatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgtcaatcagcacttagatgtta |
227 |
Q |
| |
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||||||| ||||| ||| |||||| ||| | ||||||||||| || ||| | |||||||||| ||||||| | ||| ||||| || ||||||||| |
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| T |
44143567 |
aatcgtatggtactagaatatctccttctaatgcgcaatcttattgataatttggcttcaattggtgatccagtccctagtaatcaacatctagatgtta |
44143468 |
T |
|
| Q |
228 |
ttttggaaggtttaccacatggatatagtc---cagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatcgctgctaat |
324 |
Q |
| |
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|| | |||||||||||||| || |||| | | ||| |||||| |||| ||||| ||||| ||||||||| ||||||||||||| || || || |
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| T |
44143467 |
ttctagaaggtttaccacagaaattcagtcgtgctgctatttctgttcttgaaagtaaatttgagactattgacatttatgaggttgaatccctccttat |
44143368 |
T |
|
| Q |
325 |
tgctcatgaaactcgtcttgacaaatt |
351 |
Q |
| |
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||||||||| || | |||||||||||| |
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| T |
44143367 |
tgctcatgagacacttcttgacaaatt |
44143341 |
T |
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