View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15611_high_18 (Length: 359)

Name: NF15611_high_18
Description: NF15611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15611_high_18
NF15611_high_18
[»] chr5 (9 HSPs)
chr5 (1-335)||(13447062-13447396)
chr5 (13-335)||(13419511-13419833)
chr5 (68-335)||(13426402-13426669)
chr5 (56-333)||(13413168-13413445)
chr5 (87-207)||(13388988-13389108)
chr5 (87-208)||(13385167-13385288)
chr5 (87-207)||(13454143-13454263)
chr5 (261-335)||(13454015-13454089)
chr5 (254-333)||(13393562-13393641)
[»] chr4 (2 HSPs)
chr4 (241-315)||(47601353-47601427)
chr4 (98-138)||(47601530-47601570)


Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 13447396 - 13447062
Alignment:
Q  1 tgagtcaatcaaaagaaacgagtagaaaataattgctcaatttggttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447396 tgagtcaatcaaaagaaacgagtagaaaataattgctcaatttcgttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtg 13447297  T
Q  101 ggaagcaaagtaaaaaagcttaaagttggagacaaagtaggggtgggatacatggttgatccatgtcgttcttgtgaaaattgtgccgacgatattgaga 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  13447296 ggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgcgaaaattgtgccgacgatattgaga 13447197  T
Q  201 attactgcaccaaatatactcaaacattcaatggtaagtctcgtggtggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447196 attactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactt 13447097  T
Q  301 tgtgattcgcattcctgatagcttacctcttgatg 335  Q
    |||||||||||||||||||||||||||||||||||    
T  13447096 tgtgattcgcattcctgatagcttacctcttgatg 13447062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 335
Target Start/End: Complemental strand, 13419833 - 13419511
Alignment:
Q  13 aagaaacgagtagaaaataattgctcaatttggttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtgggaagcaaagta 112  Q
    |||||| |||||| ||||||||| |||||||| |||||| | || ||||||||  ||||| |||||| ||||| ||||||| ||||| ||||||||||||    
T  13419833 aagaaatgagtagtaaataattgttcaatttgtttataatttatttaataaatgcaggcatgaacttgcgggtatagtaaccgaggttggaagcaaagta 13419734  T
Q  113 aaaaagcttaaagttggagacaaagtaggggtgggatacatggttgatccatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcacca 212  Q
     ||||| ||||||||||||||||||| || |||||||||||||||||| |||||||||| ||  |||||||||| |||||| |||||||||||||| | |    
T  13419733 gaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatcttgagaattactgcccaa 13419634  T
Q  213 aatatactcaaacattcaatggtaagtctcgtggtggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcat 312  Q
     || |||    ||||    ||  |||| ||||| ||||||  |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13419633 catttacagtcacatgtggtgcaaagtatcgtgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcat 13419534  T
Q  313 tcctgatagcttacctcttgatg 335  Q
    |||||||||||||||||||||||    
T  13419533 tcctgatagcttacctcttgatg 13419511  T

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Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 68 - 335
Target Start/End: Complemental strand, 13426669 - 13426402
Alignment:
Q  68 aggcacgaacttacgggtgtagtaacagaggtgggaagcaaagtaaaaaagcttaaagttggagacaaagtaggggtgggatacatggttgatccatgtc 167  Q
    ||||| |||||| ||||| | ||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| ||||||    
T  13426669 aggcatgaacttgcgggtattgtaacagaggttggaagcaaagtagaaaagtttaaagttggagacaaagtaggagtgggatacatggttgattcatgtc 13426570  T
Q  168 gttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtggtggcactatcacctatggagg 267  Q
    |||| || ||||||||||| || ||| |||||||||||||| || || | ||    ||||    || ||||| ||||| |||||   |||| ||||||||    
T  13426569 gttcatgcgaaaattgtgcggaagatcttgagaattactgcccccaacaaacagttacatgtggtgctaagtatcgtgatggcagcgtcacatatggagg 13426470  T
Q  268 tttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatg 335  Q
    ||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13426469 ttattccgactcaatggttgcagatgagcactttgtgattcgcattcctgatagcttacctcttgatg 13426402  T

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Target: chr5; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 56 - 333
Target Start/End: Complemental strand, 13413445 - 13413168
Alignment:
Q  56 tgtaataaatataggcacgaacttacgggtgtagtaacagaggtgggaagcaaagtaaaaaagcttaaagttggagacaaagtaggggtgggatacatgg 155  Q
    ||||||||||| ||||| || ||| ||||| |||||||||| || |||||||||||  | ||| |||||||||||||||||||||| || || ||| ||     
T  13413445 tgtaataaatacaggcatgagcttgcgggtatagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttga 13413346  T
Q  156 ttgatccatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtggtggcactat 255  Q
    ||||| ||||||| || ||  || |||||   ||| || |||||||||||||| |||||| |      ||||    ||  |||| ||||| ||| ||  |    
T  13413345 ttgattcatgtcgatcatgccaagattgtaatgacaatcttgagaattactgccccaaatttgtagtcacatgtggtgccaagtatcgtgatggaaccgt 13413246  T
Q  256 cacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttga 333  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||    
T  13413245 cacttatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctgacaacatacctcttga 13413168  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 13388988 - 13389108
Alignment:
Q  87 tagtaacagaggtgggaagcaaagtaaaaaagcttaaagttggagacaaagtaggggtgggatacatggttgatccatgtcgttcttgtgaaaattgtgc 186  Q
    |||| ||| ||||||||||||||||| ||||| | || ||||||||||||||||| || || |||||||||||| ||||||| || ||| |||||||||     
T  13388988 tagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacatggttgattcatgtcgatcatgtcaaaattgtgt 13389087  T
Q  187 cgacgatattgagaattactg 207  Q
     ||| || |||| ||||||||    
T  13389088 tgacaatcttgaaaattactg 13389108  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 13385167 - 13385288
Alignment:
Q  87 tagtaacagaggtgggaagcaaagtaaaaaagcttaaagttggagacaaagtaggggtgggatacatggttgatccatgtcgttcttgtgaaaattgtgc 186  Q
    |||| ||| ||||||||||||||||| ||||| | || ||||||||||||||||| || || |||||  ||||| ||||||| || ||| |||||||||     
T  13385167 tagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacataattgattcatgtcgatcgtgtcaaaattgtgt 13385266  T
Q  187 cgacgatattgagaattactgc 208  Q
     ||| || |||| |||||||||    
T  13385267 tgacaatcttgaaaattactgc 13385288  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 13454263 - 13454143
Alignment:
Q  87 tagtaacagaggtgggaagcaaagtaaaaaagcttaaagttggagacaaagtaggggtgggatacatggttgatccatgtcgttcttgtgaaaattgtgc 186  Q
    |||| ||||| |||||||||||||| |||||| | ||||||||||||| |||||| ||||||| | |||||||| | ||||  || ||| |||||||||     
T  13454263 tagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgt 13454164  T
Q  187 cgacgatattgagaattactg 207  Q
     ||  || |||||||||||||    
T  13454163 tgataatcttgagaattactg 13454143  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 13454089 - 13454015
Alignment:
Q  261 atggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatg 335  Q
    ||||||| ||||| |||||||||||| | ||||||||||||||| |||||||||| |||   |||||||||||||    
T  13454089 atggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattccagatcagttacctcttgatg 13454015  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 333
Target Start/End: Original strand, 13393562 - 13393641
Alignment:
Q  254 atcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttga 333  Q
    ||||| |||||||| | ||| ||||||||||||||||| ||||||||| |  ||| |||||||||| ||||||| |||||    
T  13393562 atcacatatggagggtactctgactcaatggttgcagatgagcactttatagttcacattcctgatggcttaccacttga 13393641  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 47601427 - 47601353
Alignment:
Q  241 tcgtggtggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcc 315  Q
    ||||| |||||| | ||| || ||||||| ||| ||||||||||||| |||||||||||||||| ||| ||||||    
T  47601427 tcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcc 47601353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 47601570 - 47601530
Alignment:
Q  98 gtgggaagcaaagtaaaaaagcttaaagttggagacaaagt 138  Q
    ||||||||||||||| ||||| | |||||||||||||||||    
T  47601570 gtgggaagcaaagtagaaaagttcaaagttggagacaaagt 47601530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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