View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15611_high_24 (Length: 343)
Name: NF15611_high_24
Description: NF15611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15611_high_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 35475811 - 35475571
Alignment:
| Q |
9 |
gacatcatcacaaccattttgagttcaaatatgggaacgtgagggggacaaataaagcagcagtataataaatataagaatatatcatgaaaggaatttt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35475811 |
gacatcatcacaaccattgtgagttcaaatatgggaacgtgagggggacaaataaagcagtagtataataaatataagaatatatcatgaaaggaatttt |
35475712 |
T |
|
| Q |
109 |
ttacatttttaggatgaggataataagtttc-------nnnnnnnnnngagagggataataagttggtatcgtattnnnnnnnnntgtgttcagtattac |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
35475711 |
ttacatttttaggatgaggataataagtttcttttgttttttttttttgagagggataataagttggtatcgtattaaaaaaaaatgtattcagtattac |
35475612 |
T |
|
| Q |
202 |
tattgccataaatatagagtaagtaagaagattattgactt |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35475611 |
tattgccataaatatagagtaagtaagaagattattgactt |
35475571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 325
Target Start/End: Complemental strand, 35475084 - 35474991
Alignment:
| Q |
229 |
aagattattgacttgagagtggtatataatctaatctaatcaaacctgtnnnnnnnnn--cattttgcatacaccacaaattcatctaacatgtgcatg |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35475084 |
aagattattgacttgagagtggtatataatctaatctaa-----cctgtaaaaaaaaaaacattttgcatacaccacaaattcatctaacatgtgcatg |
35474991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University