View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15611_high_27 (Length: 331)

Name: NF15611_high_27
Description: NF15611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15611_high_27
NF15611_high_27
[»] chr1 (1 HSPs)
chr1 (19-308)||(32731839-32732128)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 32732128 - 32731839
Alignment:
Q  19 tccaccacctccattattctcatggttagaataaaacgtcagcgtttgacgtccaccgaaccccggcgttgatcggcatgacgtgaaaaagatctcatac 118  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32732128 tccaccacctccactattgtcatggttagaataaaacgtcagcgtttgacgtccaccaaaccccggcgttgatcggcatgacgtgaaaaagatctcatac 32732029  T
Q  119 gctgtctccctcacatcatcagcgctcatactttccacatttccaaatggccattccagcccatcttcttcaccaataaccgtttcaatatggcgttggt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32732028 gctgtctccctcacatcatcagcgctcatactttccacatttccaaatggccattccagcccatcttcttcaccaataaccgtttcaatatggcgttggt 32731929  T
Q  219 ggaggaagtcgtatgacgcagaagggtaggactcacggcggctatgctgacccatgcgccggagggtcaggataaccggtggtgatgatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32731928 ggaggaagtcgtatgacgcagaagggtaggactcacggcggctatgctgacccatgcgccggagggtcaggataaccggtggtgatgatg 32731839  T

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