View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15611_high_28 (Length: 328)
Name: NF15611_high_28
Description: NF15611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15611_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 44104791 - 44104558
Alignment:
| Q |
43 |
ttattcttgtaaaactgagataacataactggtccagcccatacacaaatttggattgctttttccttatttctattatcactattatttttatacaatt |
142 |
Q |
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| T |
44104791 |
ttattcttgtaaaactgagataacataactggtccagcccatacacaaatttggattgctttttccttatttctattatcactattatttttatacaatt |
44104692 |
T |
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| Q |
143 |
ctttagaatatttattgacatgttagtannnnnnnnattcactgagatttgaattatgatcattggaactctcttaaggctttgtttgtattgatgaa-- |
240 |
Q |
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| T |
44104691 |
ctttagaatatttattgacatgttagtatattttttattcactgagatttgaattatgatcattggaactctcttaagactttgtttgtattgatgaaat |
44104592 |
T |
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| Q |
241 |
--atatgatggaatggagtggtatggaatgtggt |
272 |
Q |
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| T |
44104591 |
atatatgatggaatggagtggtatggaatgtggt |
44104558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 305
Target Start/End: Complemental strand, 44104540 - 44104507
Alignment:
| Q |
272 |
tgaaaaattagtggaatagagtgatatatgatga |
305 |
Q |
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| T |
44104540 |
tgaaaaattagtggaatagagtgatatatgatga |
44104507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 16597861 - 16597813
Alignment:
| Q |
217 |
taaggctttgtttgtattgatgaaatatgatggaatggagtggtatgga |
265 |
Q |
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| T |
16597861 |
taaggctatgtttggattgatggaatgtaatggaatggagtggtatgga |
16597813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 35306944 - 35306892
Alignment:
| Q |
216 |
ttaaggctttgtttgtattgatgaaatatgatggaatggagtggtatggaatg |
268 |
Q |
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|||||||| |||||| ||||||| | | | ||||||||||||||||||||||| |
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| T |
35306944 |
ttaaggctatgtttggattgatggattgtaatggaatggagtggtatggaatg |
35306892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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