View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15611_high_30 (Length: 323)
Name: NF15611_high_30
Description: NF15611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15611_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 42309447 - 42309552
Alignment:
| Q |
40 |
tcatgacccaactaggagactttttattttgtgaaaaagccaaagttttcaatgtagtggtttcagggtactaatatttccatttaccttcttttatcta |
139 |
Q |
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| T |
42309447 |
tcatgacccaactaggagactttttattttgtgaaaaaaccaaagtgttcaatgtagtggtttcagggtactaatatttccatttaccttcttttatcta |
42309546 |
T |
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| Q |
140 |
ttttag |
145 |
Q |
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|||||| |
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| T |
42309547 |
ttttag |
42309552 |
T |
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Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 42309603 - 42309689
Alignment:
| Q |
208 |
ctatcttttagaaaggaatataattttatatgttcatcttgcattgcctctgtttctttgtgcagtttatgatttgcttggactgtt |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42309603 |
ctatcttttagaaaggaatataattttatatgttcatcttgcattgcctctgtttctttgtgcagtttatgatttgcttggactgtt |
42309689 |
T |
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