View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15611_high_36 (Length: 308)
Name: NF15611_high_36
Description: NF15611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15611_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 4132329 - 4132626
Alignment:
| Q |
1 |
actaactgaatgatctacttctaggtgcaagtgaacataaatgtttacctttgagccttggcaaagtaaacaatatcctatcagaatgtttatcac---- |
96 |
Q |
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| T |
4132329 |
actaactgaatgatctacttctaggtgcaagtgaacataaatgtttacctttgagccttggcaaagtaaacaatatcctatcagaatgtttatcaccata |
4132428 |
T |
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| Q |
97 |
---------------catattacaaatatgcatgttcagaatttaggaccattgatcatcaaccaaaggtgtattatttacaattaattctataacagag |
181 |
Q |
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| T |
4132429 |
ttacaaatatgtcaccatattacaaatatgcatgttcagaatttaggaccattgatcatcaaccaaaggtgtattatttacaattaattctataacagag |
4132528 |
T |
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| Q |
182 |
atttactggagaaatcagaattttttacctccatgtttttatcaaaagagccattgtgttcaacacaaactttcgggggcacattctcagacctgact |
279 |
Q |
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| T |
4132529 |
atttactagagaaatcagaattttttacctccatgtttttatcaaaagagccattgtgttcaacacaaactttcgggggcacattctcagacctgact |
4132626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 4109367 - 4109436
Alignment:
| Q |
205 |
tttacctccatgtttttatcaaaagagccattgtgttcaacacaaactttcgggggcacattctcagacc |
274 |
Q |
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| T |
4109367 |
tttacctccatgtttttatcaaaagtgctattgtgttgaacacaaactttcggttgcacattctcggacc |
4109436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 4109118 - 4109195
Alignment:
| Q |
3 |
taactgaatgatctacttctaggtgcaagtgaa--cataaatgtttacctttgagccttggcaaagtaaacaatatcc |
78 |
Q |
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| T |
4109118 |
taactgaatgatctatttttaggtgcaaatgagagcataaatgttcacctttgaagtttgccaaagtaaacaatatcc |
4109195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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