View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15611_high_38 (Length: 304)
Name: NF15611_high_38
Description: NF15611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15611_high_38 |
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| [»] scaffold0728 (1 HSPs) |
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Alignment Details
Target: scaffold0728 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 21 - 278
Target Start/End: Complemental strand, 5646 - 5389
Alignment:
| Q |
21 |
catgggtccgtaggtgatccaacaactggggaagggattttggaaccaagttccctagaactaacactctgcagctgttgctgctgtttctcgcgatgag |
120 |
Q |
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| T |
5646 |
catgggtccgtaggtgatccaacaactgaggaagggattttgtaaccaagttccctagagctaacactctgcagttgttgctgctgtttctcgcgatgag |
5547 |
T |
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| Q |
121 |
gaaatgtggacatttgagggatcagtggggagattggttcaagccttctaggtgacatactaccgcatgaagggacaccaaatgaagcttgtaaaagacg |
220 |
Q |
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| T |
5546 |
gaagtgcagacatttgagggctcagtggggagatttgttcaagccttctaggtgacatgctaccgcatgaagggacactaaatgaagcttgtaaaagacg |
5447 |
T |
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| Q |
221 |
atgctcttcattcttgggagacggcatattagtatttgaaggcgataacatatgttga |
278 |
Q |
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| T |
5446 |
atgctcatcattcttgggagacagcatattaatatttgaaggcgataacatatgttga |
5389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 21 - 278
Target Start/End: Complemental strand, 19410080 - 19409823
Alignment:
| Q |
21 |
catgggtccgtaggtgatccaacaactggggaagggattttggaaccaagttccctagaactaacactctgcagctgttgctgctgtttctcgcgatgag |
120 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
19410080 |
catgggtccgtaggtgatccaacaactgaggaagggattttgtaaccaagttccctagagctaacactctgcagttgttgctgctgtttctcgcgatgag |
19409981 |
T |
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| Q |
121 |
gaaatgtggacatttgagggatcagtggggagattggttcaagccttctaggtgacatactaccgcatgaagggacaccaaatgaagcttgtaaaagacg |
220 |
Q |
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| T |
19409980 |
gaagtgcagacatttgagggctcagtggggagatttgttcaagccttctaggtgacatgctaccgcatgaagggacactaaatgaagcttgtaaaagacg |
19409881 |
T |
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| Q |
221 |
atgctcttcattcttgggagacggcatattagtatttgaaggcgataacatatgttga |
278 |
Q |
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| T |
19409880 |
atgctcatcattcttgggagacagcatattaatatttgaaggcgataacatatgttga |
19409823 |
T |
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