View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15611_high_4 (Length: 439)
Name: NF15611_high_4
Description: NF15611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15611_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 64 - 425
Target Start/End: Original strand, 33790832 - 33791189
Alignment:
| Q |
64 |
atttttaggaagctgcatatttatcttactctacacatatacttaccaaaatatcacaatgagatggacatcatcacaatttggttgatttaatttcagg |
163 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | | | ||| | || |||||||||||||||||||||| |
|
|
| T |
33790832 |
atttttaggcagctgcatatttatcttactctacacatatacttaccaaaatat-acaat-attttgtcatgacca--atttggttgatttaatttcagg |
33790927 |
T |
|
| Q |
164 |
ggtgtgacgcatccatattaatagactcaaagaagggcaatgaatcagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatga |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33790928 |
ggtgtgacgcatccatattaatagactcaaagaagggcaatgaatcagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatga |
33791027 |
T |
|
| Q |
264 |
aatcaaaagaatcctagaaaatgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggacca |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33791028 |
aatcaaaagaatcctagaaaatgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattctgttgtcttagcaggtggacca |
33791127 |
T |
|
| Q |
364 |
agttacaatgttcctacaggaagacgtgatggattagtatcaactgttgatgatgtccatct |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
33791128 |
agttacaatgttcctacaggaagacgtgatggattagtatcaactgttaatgatgtacatct |
33791189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 399
Target Start/End: Complemental strand, 33764212 - 33764098
Alignment:
| Q |
285 |
tgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacagga |
384 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || || | || ||||||||| | || | |||| | || ||||||| |||||| ||||||||||| |
|
|
| T |
33764212 |
tgcatgtccatcaacggtttcatgtgcagacatcgtagcacttgctacaagagatgctgtggccttatctggaggaccaaaatacaatattcctacagga |
33764113 |
T |
|
| Q |
385 |
agacgtgatggatta |
399 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
33764112 |
agacgtgacggatta |
33764098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University