View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15611_high_8 (Length: 419)
Name: NF15611_high_8
Description: NF15611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15611_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 25 - 388
Target Start/End: Complemental strand, 54221560 - 54221197
Alignment:
| Q |
25 |
catcaatgggaaaagaatagccatagcccaagcctcatagggtacaaattcttaagttaaattatcaagctcttcataagaatcaactcaagctcaactc |
124 |
Q |
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| T |
54221560 |
catcaatgggaaaagaatagccatagcccaagcctcatagggtacaaattcttaagttaaattatccagctcttcataagaatcaactcaaactcatctc |
54221461 |
T |
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| Q |
125 |
ttcatgtagatgccaattgcaaaagttcaatatttagttcaaatgtagctccaggctgtaacaacataaacaaagttcaagaaccgcatggtgtaggttt |
224 |
Q |
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| T |
54221460 |
ttcatgtagatgccaattgcaaaagttcaatatttagttcaaatgtagctccaggctgtaacaacataaacaaagttcaagaaccgcatggtgtaggttt |
54221361 |
T |
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| Q |
225 |
gtcattttcgttgaagagaacaatatttttcctacatattattgtccataacctatatctaatcaacaatgagtaaaaagtgaaatgtacaaataaaata |
324 |
Q |
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| T |
54221360 |
gtcattttcgttgaagagaacaatatttttcctacatattattgtccataacctatatctaatcaacaatgagtaaaaagtgaaatgtacaaataaaata |
54221261 |
T |
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| Q |
325 |
gtggaggtgagcataacagagtggcaaaacaactttcataacaacgcttaaggcacttgtccta |
388 |
Q |
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| T |
54221260 |
gtggaggtgagcataacagagtggcaaaacaactttcatgacaacgcttaaggcacttgtccta |
54221197 |
T |
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