View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15611_high_9 (Length: 415)
Name: NF15611_high_9
Description: NF15611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15611_high_9 |
 | |
|
| [»] scaffold0024 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 30264380 - 30264764
Alignment:
| Q |
1 |
gctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264380 |
gctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttg |
30264479 |
T |
|
| Q |
101 |
gatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgtcacatagccatcaaagtcatgatcatagaattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || |||||||||||||| |
|
|
| T |
30264480 |
gatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatcttgatcatagaattc |
30264579 |
T |
|
| Q |
201 |
aattgactcatttttagggaacactggaaccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctttatctctcacctat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264580 |
aattgactcatttttagggaacactggaaccttaaaatgatcttttggatttacctctacttttttccatttcatatttccatctttatctctcacctat |
30264679 |
T |
|
| Q |
301 |
atacatggttgcatgcacatgcacatgttaatatttgttatatgatagatatgtaaggaaatataaacactaaaacacataaaaa |
385 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264680 |
atacatggttgcatgcatatgcacatgttaatatttgttatatgataaatatgtaaggaaatataaacactaaaacacataaaaa |
30264764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 30287808 - 30287424
Alignment:
| Q |
1 |
gctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287808 |
gctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttg |
30287709 |
T |
|
| Q |
101 |
gatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgtcacatagccatcaaagtcatgatcatagaattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || |||||||||||||| |
|
|
| T |
30287708 |
gatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatcttgatcatagaattc |
30287609 |
T |
|
| Q |
201 |
aattgactcatttttagggaacactggaaccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctttatctctcacctat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287608 |
aattgactcatttttagggaacactggaaccttaaaatgatcttttggatttacctctacttttttccatttcatatttccatctttatctctcacctat |
30287509 |
T |
|
| Q |
301 |
atacatggttgcatgcacatgcacatgttaatatttgttatatgatagatatgtaaggaaatataaacactaaaacacataaaaa |
385 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287508 |
atacatggttgcatgcatatgcacatgttaatatttgttatatgataaatatgtaaggaaatataaacactaaaacacataaaaa |
30287424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 30271274 - 30271576
Alignment:
| Q |
1 |
gctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttg |
100 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |||||| ||||||| |
|
|
| T |
30271274 |
gctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcatttcttgttg |
30271373 |
T |
|
| Q |
101 |
gatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgtcacatagccatcaaagtcatgatcatagaattc |
200 |
Q |
| |
|
|||| || || | ||||||||||||||| |||||||||| |||||| ||||| || | ||||||| |||||| ||||||| | |||||||| ||||| |
|
|
| T |
30271374 |
gatatttaattaaatgtatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacataatcatcaaaatattgatcatacaattc |
30271473 |
T |
|
| Q |
201 |
aattgactcatttttagggaacactggaaccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctttatctctcacctat |
300 |
Q |
| |
|
|||||| ||| |||||||||| | |||||| | | |||||||| || || |||||||| |||||||||||||| || |||||||| |||||||||||| |
|
|
| T |
30271474 |
aattgattcacttttagggaatattggaacgtgcatatgatcttcaggcttcacctctacctttttccatttcattttgccatctttgtctctcacctat |
30271573 |
T |
|
| Q |
301 |
ata |
303 |
Q |
| |
|
||| |
|
|
| T |
30271574 |
ata |
30271576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 30280915 - 30280613
Alignment:
| Q |
1 |
gctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttg |
100 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |||||||||||||| |
|
|
| T |
30280915 |
gctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgttg |
30280816 |
T |
|
| Q |
101 |
gatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgtcacatagccatcaaagtcatgatcatagaattc |
200 |
Q |
| |
|
|||| || || | ||| ||||||||||| |||||||||| |||||| ||||| || | ||||||| |||||| ||||||| | |||||||| ||||| |
|
|
| T |
30280815 |
gatatttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacataatcatcaaaatattgatcatacaattc |
30280716 |
T |
|
| Q |
201 |
aattgactcatttttagggaacactggaaccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctttatctctcacctat |
300 |
Q |
| |
|
|||||| ||| |||||||||| | ||||||||| | |||||||| || || |||||| ||||||||| |||| || ||||||| ||||||||||||| |
|
|
| T |
30280715 |
aattgattcacttttagggaatattggaaccttcatatgatcttcaggcttcgcctctatttttttccacatcattttgccatcttgatctctcacctat |
30280616 |
T |
|
| Q |
301 |
ata |
303 |
Q |
| |
|
||| |
|
|
| T |
30280615 |
ata |
30280613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 30048578 - 30048723
Alignment:
| Q |
1 |
gctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
30048578 |
gctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtttgaatattatggtgcaagcagcattggttgttg |
30048677 |
T |
|
| Q |
101 |
gatacttgataacatgtatttcccaaaggggtttgtcttttggtgt |
146 |
Q |
| |
|
|||| ||||||||||| ||||||||||| ||||| |||| |||||| |
|
|
| T |
30048678 |
gataattgataacatgaatttcccaaagtggtttatcttgtggtgt |
30048723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 30062919 - 30063064
Alignment:
| Q |
1 |
gctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
30062919 |
gctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtttgaatattatggtgcaagcagcattggttgttg |
30063018 |
T |
|
| Q |
101 |
gatacttgataacatgtatttcccaaaggggtttgtcttttggtgt |
146 |
Q |
| |
|
|||| ||||||||||| ||||||||||| ||||| |||| |||||| |
|
|
| T |
30063019 |
gataattgataacatgaatttcccaaagtggtttatcttgtggtgt |
30063064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 10 - 303
Target Start/End: Original strand, 30304350 - 30304643
Alignment:
| Q |
10 |
agacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |||||||||||||||||| || | |
|
|
| T |
30304350 |
agacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgttggatatttaa |
30304449 |
T |
|
| Q |
110 |
taacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgtcacatagccatcaaagtcatgatcatagaattcaattgactc |
209 |
Q |
| |
|
| | ||| ||||||||||| |||||||||| |||||| ||||| || | ||||||| |||||| ||||||| | |||||||| ||||||||||| || |
|
|
| T |
30304450 |
ttaaatgcatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacataatcatcaaaatattgatcatacaattcaattgattc |
30304549 |
T |
|
| Q |
210 |
atttttagggaacactggaaccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctttatctctcacctatata |
303 |
Q |
| |
|
| |||||||||| | ||||||||| | |||||||| || || |||||| ||||||||| |||| || ||||||| |||||||||||||||| |
|
|
| T |
30304550 |
acttttagggaatattggaaccttcatatgatcttcaggcttcgcctctatttttttccacatcattttgccatcttgatctctcacctatata |
30304643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 30032332 - 30032483
Alignment:
| Q |
1 |
gctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||| |||||| |
|
|
| T |
30032332 |
gctctttgaagacaagaaagaagagcacccatgagagagtaaccgtcaccaagtgcatgatgaagtttgaatattatggtgcaagcttcattggttgttg |
30032431 |
T |
|
| Q |
101 |
gatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttc |
152 |
Q |
| |
|
|||| ||||||| ||| ||||||||||| ||||| |||| |||||| ||||| |
|
|
| T |
30032432 |
gataattgataatatgaatttcccaaagtggtttatcttgtggtgttctttc |
30032483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 30228717 - 30228850
Alignment:
| Q |
1 |
gctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
30228717 |
gctctttgaagacaagaaagaagagcactcatgagagagtaaccatcaccaagtgcatgattaagtttgaatattatggtgcaagcagcattggttgttg |
30228816 |
T |
|
| Q |
101 |
gatacttgataacatgtatttcccaaaggggttt |
134 |
Q |
| |
|
|||| ||||||| ||| ||||||||||| ||||| |
|
|
| T |
30228817 |
gataattgataatatgaatttcccaaagtggttt |
30228850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 30220347 - 30220209
Alignment:
| Q |
1 |
gctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttg |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |||||||||||||| |
|
|
| T |
30220347 |
gctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgttg |
30220248 |
T |
|
| Q |
101 |
gatacttgataacatgtatttcccaaaggggtttgtctt |
139 |
Q |
| |
|
|||| || || | ||| ||||||||||||||||| |||| |
|
|
| T |
30220247 |
gatatttaatcaaatgaatttcccaaaggggtttatctt |
30220209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 79567 - 79679
Alignment:
| Q |
16 |
gaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacat |
115 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| || ||| ||| ||||| |||||||||| || |||| || |
|
|
| T |
79567 |
gaaagaagtgcacccattagagagtaaccatctccaagtgcatgatgaagtttgaatactaaggtaccagctgcattttttgttggatatttaataatat |
79666 |
T |
|
| Q |
116 |
gtatttcccaaag |
128 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
79667 |
gtatctcccaaag |
79679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 72506 - 72612
Alignment:
| Q |
19 |
agaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgta |
118 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| || ||| ||| ||||| |||||||||| || |||| ||| | |
|
|
| T |
72506 |
agaagagctcccattagagagtaaccatctccaagtgcatgatgaagtttgaatactaaggtaccagctgcattttttgttggatatttaataatatgaa |
72605 |
T |
|
| Q |
119 |
tttccca |
125 |
Q |
| |
|
||||||| |
|
|
| T |
72606 |
tttccca |
72612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 2311448 - 2311381
Alignment:
| Q |
10 |
agacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattat |
77 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
2311448 |
agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattat |
2311381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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