View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15612_low_1 (Length: 601)
Name: NF15612_low_1
Description: NF15612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15612_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 226 - 582
Target Start/End: Original strand, 20714770 - 20715126
Alignment:
| Q |
226 |
taagataaaagtataacaagtaaaatagaaaatgtattgataacgagaatgtatgtttacatcaaaggttacgccttttttgtgtggatactaactaatt |
325 |
Q |
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| T |
20714770 |
taagataaaagtataacaagtaaaatagaaaatgtatcgataacgagaatgtatgtttacatcaaaggttacgccttttttgtgtcgatactaactaatt |
20714869 |
T |
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| Q |
326 |
acatctctaatattaaatttgagcaaccctcatgatatatataatcaactcaagaatttttgcagcatgagctccatagtcaaagaacttggaattgtag |
425 |
Q |
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| T |
20714870 |
acatctctaatattaaatttgagcaaccctcatgatatatataatcaactcaagaatttttgcagcctgaactccatagtcaaagaacttggaattgtag |
20714969 |
T |
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| Q |
426 |
ctcacactcgagagaagacattgaagccatatggttaagaaagcaagaggctattgtcaaaagagaccgcatgaggcaatactcttcttcgcaaaaggta |
525 |
Q |
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| T |
20714970 |
ctcacactcgagagaagacattgaagccatatggttaagaaagcaagaggctattgtcaaaagagaccgcatgaggcaatactcttcttcgcaaaaggta |
20715069 |
T |
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| Q |
526 |
atcgcatatcatttcacataaacataaaatagtctaaaaaatggaaaattgaacctt |
582 |
Q |
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| T |
20715070 |
atcgcatatcatttcacataaacataaaatagtctaaaaaatggaaaattgaacctt |
20715126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 20714600 - 20714771
Alignment:
| Q |
12 |
agaactttgaagaatattccctcaaatgcaaaaactgagaagcaaatcgaggaaagaagcagccatacaaaggaagaaaactacgaaaatgaccatataa |
111 |
Q |
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| T |
20714600 |
agaactttgaagaatattccctcaaatgcaaaaactgagaagcaaatcgaggaaagaagcagccatacaaaggaagaaaactacgaaaatgaccatataa |
20714699 |
T |
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| Q |
112 |
aacagtttccaaagcaaaagaaaaagatagaagagaatgaacttaaggtaaatatgtcacatttatgttata |
183 |
Q |
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| T |
20714700 |
aacagtttccaaagcaaaagaaaaagatagaagagaatgaacttaaggtaaatatatcacatttatgttata |
20714771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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