View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15612_low_2 (Length: 263)
Name: NF15612_low_2
Description: NF15612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15612_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 39789911 - 39789677
Alignment:
| Q |
18 |
gaaagtagtagcataggctaagtcttccaagtttccttcagattgaactcttctaaaccctttgttttgactttcaaggtcagaaatggagggtgaaatt |
117 |
Q |
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| T |
39789911 |
gaaagtagtagcataggctaagtcttccaagtttccttcagattgaactcttctaaaccctttgttttgtctttcaaggtcagaaatggagggtgaaatt |
39789812 |
T |
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| Q |
118 |
ggagaagaactgcatgagagtctgtgattgttatgatgatgatgatgttggattgaagtggttggtggtggtagaggtttgagtgcatgacaagtttcaa |
217 |
Q |
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| T |
39789811 |
ggagaagaactgcatgagagtctgtgattgttatgatgatgatgatgttgtattgaagtggttggtggtggtagaggtttgagtgcatgacaagtttcaa |
39789712 |
T |
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| Q |
218 |
gatgaagactttgaatatgagtaggagtattatct |
252 |
Q |
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| T |
39789711 |
ggtgaagactttgaatatgagtaggagtattatct |
39789677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 39411840 - 39411978
Alignment:
| Q |
23 |
tagtagcataggctaagtcttccaagtttccttcagattgaactcttctaa---accctttgttttgactttcaaggtcagaaatggagggtgaaattgg |
119 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| || |||||||| |
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| T |
39411840 |
tagtggcataggctaagtcttccaagttcccttcagattgaactcttctaatcaaccctttgttttgtctttcaagatcagaaatggaaggagaaattgg |
39411939 |
T |
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| Q |
120 |
agaagaactgcatgagagtctgtgattgttatgatgatg |
158 |
Q |
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| T |
39411940 |
agaagaagtgcatgagagtttgtgattgtgatgatgatg |
39411978 |
T |
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