View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15612_low_3 (Length: 262)
Name: NF15612_low_3
Description: NF15612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15612_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 12926275 - 12926136
Alignment:
| Q |
82 |
gacaagaagatcagaaatgtagttattagaagataaattactttcccttataaataaatacagataaatttcgtttttagaggtttgaattaatttcttt |
181 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12926275 |
gacaagaagatcagaaaagtagttattagaagataaattactttcccttataaataaatacagataaatttcgtttttagaggtttgaattaatttcttt |
12926176 |
T |
|
| Q |
182 |
tagaggtgaattaaaaatcaattattatctcacaatattc |
221 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12926175 |
tagaggtgaattaaaaatcaattattaactcacaatattc |
12926136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 12926360 - 12926314
Alignment:
| Q |
1 |
gtcgatgaacactccatagtaaatttcc--ttcttatatacttatcc |
45 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
12926360 |
gtcgatgaacactccatagtaaatttccttttcttatatactcatcc |
12926314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 244
Target Start/End: Original strand, 30789517 - 30789670
Alignment:
| Q |
88 |
aagatcagaaatgtagttattagaagataaattactttcccttataaataaatacagataaatttcgtttttagaggtttgaattaa--tttcttttaga |
185 |
Q |
| |
|
||||||| ||| ||| || ||||||||||||||| ||||||| ||| |||||| |||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
30789517 |
aagatcacaaaagtaattgttagaagataaattagtttccct---aaaaaaataccgataaatttcttttttagaggtttgaattaatttttcttttagg |
30789613 |
T |
|
| Q |
186 |
ggtgaattaaaaatcaattattatctcacaatattccagaacattcgggctataaatac |
244 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| ||||||||| ||||||||||| |
|
|
| T |
30789614 |
ggtgaattaaaaaaaaattat--cctcacaatattagagaacattccagctataaatac |
30789670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University