View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15613_high_10 (Length: 311)

Name: NF15613_high_10
Description: NF15613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15613_high_10
NF15613_high_10
[»] chr5 (1 HSPs)
chr5 (21-311)||(39076163-39076443)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 311
Target Start/End: Complemental strand, 39076443 - 39076163
Alignment:
Q  21 gacatcatcattgcattgtctaaacatttacttgcactaatttgtatttaattgactaagtatatgcagctcaacaattatgcgaagaaaacactgaatg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39076443 gacatcatcattgcattgtctaaacatttacttgcactaatttgtttttaattgactaagtatatgcagctcaacaattatgcgaagaaaacactgaatg 39076344  T
Q  121 aagacttatatagttaagcaattaatgtccatgcatttagcttgttaagacaaattcatatttgttcgtgcaatcgaaaaagctttttgttcaacctgca 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39076343 aagacttatatagttaagcaattaatgtccatgcatttagcttgttaagacaaattcatatttgttcgtgcaatcgaaaaagctttttgttcaacctgca 39076244  T
Q  221 cttgttttactttttcataaatgcnnnnnnnnnnnnnnnnnnnctgcggctgcaattggtcttagataaatgatgaaattgaaaatgatgg 311  Q
    ||||||||||||||||||||||||                   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39076243 cttgttttactttttcataaatgc----------aaaaaaaaactgcggctgcaattggtcttagataaatgatgaaattgaaaatgatgg 39076163  T

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