View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15613_high_4 (Length: 353)

Name: NF15613_high_4
Description: NF15613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15613_high_4
NF15613_high_4
[»] chr4 (2 HSPs)
chr4 (2-353)||(43535262-43535608)
chr4 (84-149)||(9157309-9157374)
[»] chr7 (3 HSPs)
chr7 (75-190)||(22244618-22244733)
chr7 (75-149)||(2722219-2722293)
chr7 (111-149)||(37519111-37519149)
[»] chr8 (2 HSPs)
chr8 (75-148)||(43933640-43933713)
chr8 (193-292)||(43933501-43933600)
[»] chr3 (4 HSPs)
chr3 (81-149)||(34919781-34919849)
chr3 (75-183)||(40458067-40458175)
chr3 (75-149)||(41301765-41301839)
chr3 (88-149)||(14753777-14753838)
[»] chr2 (1 HSPs)
chr2 (82-149)||(31275021-31275088)
[»] chr1 (2 HSPs)
chr1 (89-149)||(18036181-18036241)
chr1 (82-170)||(18507576-18507664)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 2 - 353
Target Start/End: Complemental strand, 43535608 - 43535262
Alignment:
Q  2 aatcattcatgagacttattgtttctaattaatttttaatttatctatgtgagtacaatcttataaaactatggtttagatcatgtcttgagaatgctct 101  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43535608 aatcattcatgagacttattatttctaattaatttttaatttatctatgtgagtacaatctaataaaactatggtttagatcatgtcttgagaatgctct 43535509  T
Q  102 catggtggatatttatagcctttcttgagcttgtatttctgtgacttatgtcagaagtaacttaggcccc-aagccacgccttttatgtttcagatgttt 200  Q
     ||||||| ||||||||||||||||||||||||||||||||      | ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43535508 tatggtgggtatttatagcctttcttgagcttgtatttctg------aagtcagaagtaacttaggcccccaagccacgccttttatgtttcagatgttt 43535415  T
Q  201 ctagaagtcatttgaagcggcgatatgggaagagctcgccctaaggttaattggcccttacgagaggatgttgaacctttaatataatattgacggttca 300  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43535414 ctagaagtcatttgaagcggcgatatgggaagagctcaccctagggttaattggcccttacgagaggatgttgaacctttaatataatattgacggttca 43535315  T
Q  301 caaccccaagcacgagtcttaggactagacgaagtggtttgatataaagttgg 353  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43535314 caaccccaaacacgagtcttaggactagacgaagtggtttgatataaagttgg 43535262  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 9157309 - 9157374
Alignment:
Q  84 atgtcttgagaatgctctcatggtggatatttatagcctttcttgagcttgtatttctgtgactta 149  Q
    |||||||||||||||||||| | ||||||||||| ||  ||  || ||||||||||| ||||||||    
T  9157309 atgtcttgagaatgctctcaagatggatatttattgctctttgtgggcttgtatttcggtgactta 9157374  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 22244618 - 22244733
Alignment:
Q  75 gtttagatcatgtcttgagaatgctctcatggtggatatttatagcctttcttgagcttgtatttctgtgacttatgtcagaagtaacttaggccccaag 174  Q
    |||||||||||| ||| |||||||| |||  |||  |||||||||| ||| ||| ||||||||||| |||||||| | |  ||||||||||||||| |||    
T  22244618 gtttagatcatgccttaagaatgctatcaaagtgagtatttatagctttttttgggcttgtatttccgtgacttaggccctaagtaacttaggccctaag 22244717  T
Q  175 ccacgccttttatgtt 190  Q
     ||| |||||||||||    
T  22244718 tcacaccttttatgtt 22244733  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 2722219 - 2722293
Alignment:
Q  75 gtttagatcatgtcttgagaatgctctcatggtggatatttatagcctttcttgagcttgtatttctgtgactta 149  Q
    |||||| |||||| |||||||| |||||| | ||||||||||||| ||  |||| ||||||||||| ||||||||    
T  2722219 gtttaggtcatgttttgagaatactctcaagatggatatttatagtctaccttgggcttgtatttccgtgactta 2722293  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 37519111 - 37519149
Alignment:
Q  111 tatttatagcctttcttgagcttgtatttctgtgactta 149  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  37519111 tatttatagcctttcatgggcttgtatttctgtgactta 37519149  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 43933713 - 43933640
Alignment:
Q  75 gtttagatcatgtcttgagaatgctctcatggtggatatttatagcctttcttgagcttgtatttctgtgactt 148  Q
    |||||| ||||| |||||||||||||||| ||||| |||||||||||||||||| |||| |||| | |||||||    
T  43933713 gtttaggtcatgccttgagaatgctctcaaggtgggtatttatagcctttcttgggcttttattcccgtgactt 43933640  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 292
Target Start/End: Complemental strand, 43933600 - 43933501
Alignment:
Q  193 agatgtttctagaagtcatttgaagcggcgatatgggaagagctcgccctaaggttaattggcccttacgagaggatgttgaacctttaatataatattg 292  Q
    ||||| ||||||||||||||  | |||| |||  |||||| || ||||||| ||||||| || | ||||||||||||| ||| || ||||||||||||||    
T  43933600 agatgcttctagaagtcattacaggcggtgatgagggaagggcgcgccctagggttaatcgggctttacgagaggatgctgagcccttaatataatattg 43933501  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 34919781 - 34919849
Alignment:
Q  81 atcatgtcttgagaatgctctcatggtggatatttatagcctttcttgagcttgtatttctgtgactta 149  Q
    |||||| ||||||||| |||||| ||||| |||||||||||||||||  ||||||||||  ||||||||    
T  34919781 atcatgccttgagaattctctcaaggtgggtatttatagcctttcttaggcttgtattttcgtgactta 34919849  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 40458175 - 40458067
Alignment:
Q  75 gtttagatcatgtcttgagaatgctctcatggtggatatttatagcctttcttgagcttgtatttctgtgacttatgtcagaagtaacttaggccccaag 174  Q
    |||||| ||||| |||||||||| ||||| ||||| |||||||||||||| ||| |||||||||   |||||||| | |  |||||||||||  ||||||    
T  40458175 gtttaggtcatgccttgagaatgatctcaaggtgggtatttatagccttttttgggcttgtattcgcgtgacttacgccctaagtaacttagagcccaag 40458076  T
Q  175 ccacgcctt 183  Q
     ||| ||||    
T  40458075 tcacacctt 40458067  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 41301765 - 41301839
Alignment:
Q  75 gtttagatcatgtcttgagaatgctctcatggtggatatttatagcctttcttgagcttgtatttctgtgactta 149  Q
    |||||| ||||||| |||||||| ||||| |  || ||||||||| |||||  | ||||||||||||||||||||    
T  41301765 gtttaggtcatgtcatgagaatgatctcaagaggggtatttatagtctttcacgggcttgtatttctgtgactta 41301839  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 14753838 - 14753777
Alignment:
Q  88 cttgagaatgctctcatggtggatatttatagcctttcttgagcttgtatttctgtgactta 149  Q
    |||||||||||||||| |  || ||||||||||| ||| || ||||||||||| ||||||||    
T  14753838 cttgagaatgctctcaagaggggtatttatagcccttcatgggcttgtatttccgtgactta 14753777  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 31275021 - 31275088
Alignment:
Q  82 tcatgtcttgagaatgctctcatggtggatatttatagcctttcttgagcttgtatttctgtgactta 149  Q
    ||||| |||||||||||||| |  | || |||||||||||||||||| |||||||||||  |||||||    
T  31275021 tcatgccttgagaatgctcttaacgagggtatttatagcctttcttgggcttgtatttccttgactta 31275088  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 18036241 - 18036181
Alignment:
Q  89 ttgagaatgctctcatggtggatatttatagcctttcttgagcttgtatttctgtgactta 149  Q
    |||||||||||||||||  |||||||||||||  ||| || ||||||||||  ||||||||    
T  18036241 ttgagaatgctctcatgaaggatatttatagcacttcgtgggcttgtattttggtgactta 18036181  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 18507576 - 18507664
Alignment:
Q  82 tcatgtcttgagaatgctctcatggtggatatttatagcctttcttgagcttgtatttctgtgacttatgtcagaagtaacttaggccc 170  Q
    ||||| |||||||| ||||||| |  || ||||||||| |||||||  ||||||||||| |||||||| | |  ||||||||| |||||    
T  18507576 tcatgccttgagaaagctctcaagaagggtatttatagtctttcttaggcttgtatttccgtgacttaagcccaaagtaacttgggccc 18507664  T

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