View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15614_high_1 (Length: 458)
Name: NF15614_high_1
Description: NF15614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15614_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 11 - 439
Target Start/End: Complemental strand, 28830402 - 28829974
Alignment:
| Q |
11 |
catcatcatgcatctaccttagaaatccttaagcaacttacgaacctgttccaatgtaacaaacaacacaacggtaaacggtccctgccttgtaattgta |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28830402 |
catcatcatgcatctaccttagaaatccttaagcaacttacgaacctgttccaatgtaacaaacaacacaacggtaaacggtccctgccttgtaattgta |
28830303 |
T |
|
| Q |
111 |
ggaataaaacccttataaagagccataggaccctcagcacgaatagtcttcaaagcacaatcaatggcaccggagtaaggtggaggcgatccagcctcca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28830302 |
ggaataaaacccttataaagagccataggaccctcagcacgaatagtcttcaaagcacaatcaatggcaccggagtaaggtggaggcgatccagcctcca |
28830203 |
T |
|
| Q |
211 |
ccttcatattcatcaccctagtcttaatcacatccactggattcgatgcaaccgcggccacaaaacctgccgaaaaactcgctaccacgtgggtcccaag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28830202 |
ccttcatattcatcaccctagtcttaatcacatccactggattcgatgcaaccgcggccacaaaacctgccgaaaaactcgctaccacatgggtcccaag |
28830103 |
T |
|
| Q |
311 |
cccatccttcatccaaccatttttcaaaatcttttccttaaactcatcataggatgccagctgtgacgcggtaaccaacatggcacggttcactgttaga |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| |
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| T |
28830102 |
cccatccttcatccaaccatttttcaaaatcttttccttaaactcatcataggatgccagctgtgatgcggtaaccaacatggcgcggttcactgtcaga |
28830003 |
T |
|
| Q |
411 |
gatgaaccgcgccataggctagtaactcc |
439 |
Q |
| |
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| T |
28830002 |
gatgaaccgcgccataggctagtaactcc |
28829974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 31 - 316
Target Start/End: Complemental strand, 13919140 - 13918855
Alignment:
| Q |
31 |
agaaatccttaagcaacttacgaacctgttccaatgtaacaaacaacacaacggtaaacggtccctgccttgtaattgtaggaataaaacccttataaag |
130 |
Q |
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|||||||||| | |||||| ||||| || ||||| |||||||||| ||||| || || ||||||||||||| ||||||||||||||| ||||| ||||| |
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| T |
13919140 |
agaaatccttcaacaacttgcgaacttgctccaaagtaacaaacagaacaacagtgaaaggtccctgccttgaaattgtaggaataaatcccttgtaaag |
13919041 |
T |
|
| Q |
131 |
agccataggaccctcagcacgaatagtcttcaaagcacaatcaatggcaccggagtaaggtggaggcgatccagcctccaccttcatattcatcacccta |
230 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||| | ||||| | || ||||| | |||||||||||||||||| ||||||||||| |
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| T |
13919040 |
agccataggaccctcagcacgaactgtcttcaaagcacaatccaaagcaccagcatagggtggttcctttccagcctccaccttcatgttcatcaccctt |
13918941 |
T |
|
| Q |
231 |
gtcttaatcacatccactggattcgatgcaaccgcggccacaaaacctgccgaaaaactcgctaccacgtgggtcccaagcccatc |
316 |
Q |
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|||||||| ||||||||||||||||| |||||||| |||||||| || || | |||||| ||| ||| ||||||||||| ||||| |
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| T |
13918940 |
gtcttaataacatccactggattcgacgcaaccgccgccacaaatcccgctgcaaaactagctgtcacatgggtcccaaggccatc |
13918855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 78 - 325
Target Start/End: Complemental strand, 46255184 - 46254934
Alignment:
| Q |
78 |
acaacggtaaacggtccctgccttgtaattgtaggaataaaacccttataaagagccataggaccctcagcacgaatagtcttcaaagcacaatcaatgg |
177 |
Q |
| |
|
||||| ||||| || ||||| |||| |||||||||||||||||||||||||||||||||| || |||||||| | |||||| | ||||||||||| | |
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| T |
46255184 |
acaacagtaaaaggaccctgtcttgaaattgtaggaataaaacccttataaagagccataaccccttcagcacgtacagtcttaacagcacaatcaagtg |
46255085 |
T |
|
| Q |
178 |
caccggagtaaggtggaggcgatccagcct---ccaccttcatattcatcaccctagtcttaatcacatccactggattcgatgcaaccgcggccacaaa |
274 |
Q |
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|||| || |||| | | ||| | ||||||||||| |||| ||||||||||| |||||||| | ||||||||| |||||||| |||| ||| |
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| T |
46255084 |
cacctttatacggtgcaccctccccaccagatcccaccttcatactcataaccctagtctttatcacatcaattggattcgacgcaaccgccgccaaaaa |
46254985 |
T |
|
| Q |
275 |
acctgccgaaaaactcgctaccacgtgggtcccaagcccatccttcatcca |
325 |
Q |
| |
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||| |||| |||||||||||||||||||||||||| |||||| |||||||| |
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| T |
46254984 |
acccgccgcaaaactcgctaccacgtgggtcccaaacccatctttcatcca |
46254934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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