View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15614_high_4 (Length: 313)

Name: NF15614_high_4
Description: NF15614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15614_high_4
NF15614_high_4
[»] scaffold0091 (3 HSPs)
scaffold0091 (191-306)||(29057-29172)
scaffold0091 (73-128)||(28937-28994)
scaffold0091 (73-115)||(24740-24782)
[»] scaffold0218 (2 HSPs)
scaffold0218 (192-306)||(14378-14492)
scaffold0218 (73-123)||(14257-14307)
[»] chr3 (9 HSPs)
chr3 (198-306)||(16642304-16642412)
chr3 (193-306)||(4712800-4712913)
chr3 (191-306)||(14062778-14062893)
chr3 (198-306)||(14055037-14055145)
chr3 (198-296)||(13926858-13926957)
chr3 (73-115)||(4712997-4713039)
chr3 (73-115)||(16642153-16642195)
chr3 (73-115)||(14062983-14063025)
chr3 (73-115)||(14055222-14055264)
[»] chr6 (4 HSPs)
chr6 (191-306)||(14989375-14989490)
chr6 (193-306)||(14980263-14980376)
chr6 (73-115)||(14980460-14980502)
chr6 (191-228)||(10906902-10906939)
[»] chr1 (5 HSPs)
chr1 (191-306)||(51658662-51658777)
chr1 (191-299)||(13882243-13882351)
chr1 (206-300)||(1567069-1567166)
chr1 (73-115)||(13882464-13882506)
chr1 (73-114)||(51658854-51658895)
[»] chr7 (9 HSPs)
chr7 (191-306)||(48376787-48376902)
chr7 (191-306)||(16060512-16060627)
chr7 (191-296)||(4531759-4531865)
chr7 (73-128)||(16060394-16060449)
chr7 (73-115)||(9080226-9080268)
chr7 (191-228)||(9080338-9080375)
chr7 (73-108)||(48376657-48376692)
chr7 (206-252)||(37945878-37945924)
chr7 (73-110)||(16069010-16069047)
[»] chr8 (5 HSPs)
chr8 (191-306)||(23658526-23658649)
chr8 (191-306)||(23657751-23657884)
chr8 (73-112)||(23657668-23657707)
chr8 (261-296)||(29293929-29293964)
chr8 (73-112)||(23658443-23658482)
[»] scaffold1269 (1 HSPs)
scaffold1269 (214-306)||(1-93)
[»] scaffold0003 (3 HSPs)
scaffold0003 (191-266)||(130795-130870)
scaffold0003 (73-115)||(130653-130695)
scaffold0003 (271-305)||(130862-130896)
[»] chr2 (2 HSPs)
chr2 (206-296)||(23656470-23656561)
chr2 (211-296)||(44586470-44586556)
[»] scaffold0319 (1 HSPs)
scaffold0319 (237-306)||(13570-13639)
[»] scaffold0063 (2 HSPs)
scaffold0063 (73-128)||(28443-28498)
scaffold0063 (191-229)||(28342-28380)
[»] chr4 (1 HSPs)
chr4 (212-282)||(3576240-3576311)
[»] scaffold0061 (1 HSPs)
scaffold0061 (73-115)||(18099-18141)


Alignment Details
Target: scaffold0091 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 191 - 306
Target Start/End: Original strand, 29057 - 29172
Alignment:
Q  191 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 290  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29057 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 29156  T
Q  291 cctcattattcatctc 306  Q
    ||||||||||||||||    
T  29157 cctcattattcatctc 29172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 28937 - 28994
Alignment:
Q  73 catcataattatacgtcgtcattctcatagtca--atatatatatttacacaccaccc 128  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  28937 catcataattatacgtcgtcattctcatagtcaatatatatatatttacacaccaccc 28994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 24740 - 24782
Alignment:
Q  73 catcataattatacgtcgtcattctcatagtcaatatatatat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  24740 catcataattatacgtcgtcattctcatagtcaatatatatat 24782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 192 - 306
Target Start/End: Original strand, 14378 - 14492
Alignment:
Q  192 tcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattc 291  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14378 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattc 14477  T
Q  292 ctcattattcatctc 306  Q
    |||||||||||||||    
T  14478 ctcattattcatctc 14492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 14257 - 14307
Alignment:
Q  73 catcataattatacgtcgtcattctcatagtcaatatatatatttacacac 123  Q
    ||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  14257 catcataattatacgtcatcattgtcatagtcaatatatatatatacacac 14307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 198 - 306
Target Start/End: Original strand, 16642304 - 16642412
Alignment:
Q  198 tcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattcctcatt 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642304 tcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattcctcatt 16642403  T
Q  298 attcatctc 306  Q
    |||||||||    
T  16642404 attcatctc 16642412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 193 - 306
Target Start/End: Complemental strand, 4712913 - 4712800
Alignment:
Q  193 catcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattcc 292  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4712913 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattcc 4712814  T
Q  293 tcattattcatctc 306  Q
    ||||||||||||||    
T  4712813 tcattattcatctc 4712800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 191 - 306
Target Start/End: Complemental strand, 14062893 - 14062778
Alignment:
Q  191 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 290  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  14062893 ctcatcataactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatggaat 14062794  T
Q  291 cctcattattcatctc 306  Q
    ||||||||||||||||    
T  14062793 cctcattattcatctc 14062778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 198 - 306
Target Start/End: Complemental strand, 14055145 - 14055037
Alignment:
Q  198 tcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattcctcatt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| || ||||||||    
T  14055145 tcactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcgcattatagaatcctcatt 14055046  T
Q  298 attcatctc 306  Q
    |||||||||    
T  14055045 attcatctc 14055037  T

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Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 198 - 296
Target Start/End: Complemental strand, 13926957 - 13926858
Alignment:
Q  198 tcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactcttcgtcacattatggattcctcat 296  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||  | ||||||||||||| ||||||||||||||||||||    
T  13926957 tcactaaaatataaacattatcatttctcatcgtatttatttatttaaatatatataatatcaattgtcatcactcttcatcacattatggattcctcat 13926858  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 4713039 - 4712997
Alignment:
Q  73 catcataattatacgtcgtcattctcatagtcaatatatatat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4713039 catcataattatacgtcgtcattctcatagtcaatatatatat 4712997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 16642153 - 16642195
Alignment:
Q  73 catcataattatacgtcgtcattctcatagtcaatatatatat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  16642153 catcataattatacgtcgtcattctcatagtcaatatatatat 16642195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 14063025 - 14062983
Alignment:
Q  73 catcataattatacgtcgtcattctcatagtcaatatatatat 115  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  14063025 catcataattatacgtcatcattctcatcgtcaatatatatat 14062983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 14055264 - 14055222
Alignment:
Q  73 catcataattatacgtcgtcattctcatagtcaatatatatat 115  Q
    ||||||||||||||||| ||||| |||| ||||||||||||||    
T  14055264 catcataattatacgtcatcattatcatcgtcaatatatatat 14055222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 191 - 306
Target Start/End: Complemental strand, 14989490 - 14989375
Alignment:
Q  191 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 290  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14989490 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 14989391  T
Q  291 cctcattattcatctc 306  Q
    | ||||||||||||||    
T  14989390 cgtcattattcatctc 14989375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 193 - 306
Target Start/End: Complemental strand, 14980376 - 14980263
Alignment:
Q  193 catcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattcc 292  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14980376 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattcc 14980277  T
Q  293 tcattattcatctc 306  Q
    ||||||||||||||    
T  14980276 tcattattcatctc 14980263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 14980502 - 14980460
Alignment:
Q  73 catcataattatacgtcgtcattctcatagtcaatatatatat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  14980502 catcataattatacgtcgtcattctcatagtcaatatatatat 14980460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 10906939 - 10906902
Alignment:
Q  191 ctcatcttcactaacatataaacattatcatttctcat 228  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  10906939 ctcatcatcactaaaatataaacattatcatttctcat 10906902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 191 - 306
Target Start/End: Complemental strand, 51658777 - 51658662
Alignment:
Q  191 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 290  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51658777 ctcatcatcactaacatataaatattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 51658678  T
Q  291 cctcattattcatctc 306  Q
    ||||||||||||||||    
T  51658677 cctcattattcatctc 51658662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 191 - 299
Target Start/End: Complemental strand, 13882351 - 13882243
Alignment:
Q  191 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 290  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13882351 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacaatatggatt 13882252  T
Q  291 cctcattat 299  Q
    |||||||||    
T  13882251 cctcattat 13882243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 300
Target Start/End: Complemental strand, 1567166 - 1567069
Alignment:
Q  206 atataaacattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactcttcgtcac-attat-ggattcctcattatt 300  Q
    ||||||| ||| ||||||||||||||||||||||  ||||||||||||||||||  |||||||||||||| ||||| |||||  ||||||||||||||    
T  1567166 atataaatattgtcatttctcatcgtatttatttgtttacatatatataatatcaatcgtcatcactctttgtcacaattatatgattcctcattatt 1567069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 13882506 - 13882464
Alignment:
Q  73 catcataattatacgtcgtcattctcatagtcaatatatatat 115  Q
    |||||||||||||||||||||||||||| ||| ||||||||||    
T  13882506 catcataattatacgtcgtcattctcattgtctatatatatat 13882464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 51658895 - 51658854
Alignment:
Q  73 catcataattatacgtcgtcattctcatagtcaatatatata 114  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  51658895 catcataattatacgtcatcattctcatcgtcaatatatata 51658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 191 - 306
Target Start/End: Original strand, 48376787 - 48376902
Alignment:
Q  191 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 290  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48376787 ctcatcatcaataacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatagatt 48376886  T
Q  291 cctcattattcatctc 306  Q
    ||||||||||||||||    
T  48376887 cctcattattcatctc 48376902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 191 - 306
Target Start/End: Original strand, 16060512 - 16060627
Alignment:
Q  191 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 290  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||    
T  16060512 ctcatcatcactaacatataaacattatcatttctcatcatatttatttaattacatatatataatatcttcgtcatcactcctcatcacattatagatt 16060611  T
Q  291 cctcattattcatctc 306  Q
    ||||||||||||||||    
T  16060612 cctcattattcatctc 16060627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 191 - 296
Target Start/End: Complemental strand, 4531865 - 4531759
Alignment:
Q  191 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactcttcgtcacattatggat 289  Q
    |||||| ||| ||| |||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||  | |||||||||||||||||||||||||||    
T  4531865 ctcatcatcaataaaatataagcattattatttctcattgtatttatttatttacatatatataatatcaattgtcatcactcttcgtcacattatggat 4531766  T
Q  290 tcctcat 296  Q
    |||||||    
T  4531765 tcctcat 4531759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 16060394 - 16060449
Alignment:
Q  73 catcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16060394 catcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 16060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 9080226 - 9080268
Alignment:
Q  73 catcataattatacgtcgtcattctcatagtcaatatatatat 115  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  9080226 catcataattatacgtcatcattctcatcgtcaatatatatat 9080268  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 9080338 - 9080375
Alignment:
Q  191 ctcatcttcactaacatataaacattatcatttctcat 228  Q
    |||||| |||||||||||||||||||||||||||||||    
T  9080338 ctcatcatcactaacatataaacattatcatttctcat 9080375  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 108
Target Start/End: Original strand, 48376657 - 48376692
Alignment:
Q  73 catcataattatacgtcgtcattctcatagtcaata 108  Q
    ||||||||||||||||| ||||||||||||||||||    
T  48376657 catcataattatacgtcatcattctcatagtcaata 48376692  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 37945924 - 37945878
Alignment:
Q  206 atataaacattatcatttctcatcgtatttatttaattacatatata 252  Q
    ||||||||||  |||||||| |||||||||||||| |||||||||||    
T  37945924 atataaacatcgtcatttcttatcgtatttatttatttacatatata 37945878  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 16069047 - 16069010
Alignment:
Q  73 catcataattatacgtcgtcattctcatagtcaatata 110  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  16069047 catcataattatacgtcatcattctcatcgtcaatata 16069010  T

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Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 191 - 306
Target Start/End: Original strand, 23658526 - 23658649
Alignment:
Q  191 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattaca--------tatatataatatcttcgtcatcactcttcgtcacat 282  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  23658526 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacacacacatatatatataatatcttcgtcatcactcttcgtcacat 23658625  T
Q  283 tatggattcctcattattcatctc 306  Q
    ||||||||||||||||||||||||    
T  23658626 tatggattcctcattattcatctc 23658649  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 191 - 306
Target Start/End: Original strand, 23657751 - 23657884
Alignment:
Q  191 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatat------------------atataatatcttcgtcatcactc 272  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||                  |||||||||||||||||||||||    
T  23657751 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacatatatatatatatatatatatatataatatcttcgtcatcactc 23657850  T
Q  273 ttcgtcacattatggattcctcattattcatctc 306  Q
    ||||||||||||||||||||||||||||||||||    
T  23657851 ttcgtcacattatggattcctcattattcatctc 23657884  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 23657668 - 23657707
Alignment:
Q  73 catcataattatacgtcgtcattctcatagtcaatatata 112  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  23657668 catcataattatacgtcgtcattctcatagtctatatata 23657707  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 29293929 - 29293964
Alignment:
Q  261 tcgtcatcactcttcgtcacattatggattcctcat 296  Q
    ||||||||||||||||||||||||||||||||||||    
T  29293929 tcgtcatcactcttcgtcacattatggattcctcat 29293964  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 23658443 - 23658482
Alignment:
Q  73 catcataattatacgtcgtcattctcatagtcaatatata 112  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  23658443 catcataattataagtcgtcattctcatagtctatatata 23658482  T

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Target: scaffold1269 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 214 - 306
Target Start/End: Original strand, 1 - 93
Alignment:
Q  214 attatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattcctcattattcatctc 306  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1 attatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatggaatcctcattattcatctc 93  T

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Target: scaffold0003 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 130795 - 130870
Alignment:
Q  191 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 266  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130795 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 130870  T

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Target: scaffold0003; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 130653 - 130695
Alignment:
Q  73 catcataattatacgtcgtcattctcatagtcaatatatatat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  130653 catcataattatacgtcgtcattctcatagtcaatatatatat 130695  T

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Target: scaffold0003; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 130862 - 130896
Alignment:
Q  271 tcttcgtcacattatggattcctcattattcatct 305  Q
    ||||||||||||||||||||||||| |||||||||    
T  130862 tcttcgtcacattatggattcctcactattcatct 130896  T

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Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 206 - 296
Target Start/End: Complemental strand, 23656561 - 23656470
Alignment:
Q  206 atataaacattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactcttcgtcacattatggattcctcat 296  Q
    ||||||| ||||||||||||||| ||||||||||| || |||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  23656561 atataaatattatcatttctcattgtatttatttactttcatatatataatatcaatcgtcatcactcttcgtcacattatggattcctcat 23656470  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 44586556 - 44586470
Alignment:
Q  211 aacattatcatttctcatcgtatttatttaattacatatatataata-tcttcgtcatcactcttcgtcacattatggattcctcat 296  Q
    ||||| ||||||||  |||||| | ||||  |||||||||||||||| |  |||||||||||||| || ||| ||||||||||||||    
T  44586556 aacatcatcatttcatatcgtagtaatttctttacatatatataatactaatcgtcatcactctttgttacagtatggattcctcat 44586470  T

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Target: scaffold0319 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 13639 - 13570
Alignment:
Q  237 tttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattcctcattattcatctc 306  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  13639 tttaattacatatatataatatcttcgtcatcactctttgtcacatcatggattcctcattattcatctc 13570  T

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Target: scaffold0063 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 28498 - 28443
Alignment:
Q  73 catcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28498 catcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 28443  T

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Target: scaffold0063; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 28380 - 28342
Alignment:
Q  191 ctcatcttcactaacatataaacattatcatttctcatc 229  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  28380 ctcatcatcactaacatataaacatcatcatttctcatc 28342  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 282
Target Start/End: Complemental strand, 3576311 - 3576240
Alignment:
Q  212 acattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactcttcgtcacat 282  Q
    |||| ||||| ||||||||||||||||||  ||||| ||||||| |||  ||||||||||||||||||||||    
T  3576311 acatcatcatctctcatcgtatttatttatatacatttatataaaatcaatcgtcatcactcttcgtcacat 3576240  T

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Target: scaffold0061 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 18141 - 18099
Alignment:
Q  73 catcataattatacgtcgtcattctcatagtcaatatatatat 115  Q
    ||||||||| |||| ||||||||||||||||||||||||||||    
T  18141 catcataatcatacttcgtcattctcatagtcaatatatatat 18099  T

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