View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15614_low_2 (Length: 439)

Name: NF15614_low_2
Description: NF15614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15614_low_2
NF15614_low_2
[»] chr2 (4 HSPs)
chr2 (1-424)||(45391733-45392154)
chr2 (182-267)||(27750837-27750922)
chr2 (96-143)||(27750714-27750761)
chr2 (96-225)||(30866090-30866220)
[»] chr3 (13 HSPs)
chr3 (96-273)||(52737829-52738005)
chr3 (167-267)||(35240244-35240344)
chr3 (96-191)||(21025067-21025162)
chr3 (147-266)||(27825745-27825864)
chr3 (190-267)||(10511120-10511197)
chr3 (193-267)||(10514448-10514522)
chr3 (190-258)||(782933-782999)
chr3 (190-266)||(40131904-40131980)
chr3 (147-218)||(33785805-33785875)
chr3 (126-225)||(4607445-4607544)
chr3 (190-245)||(10661850-10661905)
chr3 (96-225)||(17743011-17743141)
chr3 (96-225)||(19044331-19044461)
[»] chr5 (6 HSPs)
chr5 (160-269)||(41326264-41326373)
chr5 (147-260)||(27405358-27405470)
chr5 (95-225)||(41949332-41949463)
chr5 (96-225)||(41951731-41951861)
chr5 (167-227)||(31339208-31339270)
chr5 (190-225)||(15424614-15424649)
[»] chr7 (1 HSPs)
chr7 (147-268)||(35130510-35130631)
[»] chr4 (1 HSPs)
chr4 (87-273)||(21214879-21215067)
[»] chr1 (6 HSPs)
chr1 (96-211)||(26231118-26231233)
chr1 (105-223)||(26231336-26231454)
chr1 (96-186)||(29849987-29850077)
chr1 (147-266)||(9905841-9905961)
chr1 (147-266)||(9908232-9908352)
chr1 (194-270)||(29850671-29850747)
[»] chr8 (3 HSPs)
chr8 (174-266)||(29908101-29908193)
chr8 (95-225)||(5690766-5690897)
chr8 (96-162)||(29907945-29908011)
[»] chr6 (2 HSPs)
chr6 (205-260)||(24249697-24249752)
chr6 (190-258)||(4555649-4555715)
[»] scaffold0017 (1 HSPs)
scaffold0017 (194-267)||(182935-183009)


Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 45391733 - 45392154
Alignment:
Q  1 tggggttgagatgccgctcagtacaatgtaaatctgtgaaaacaccgtgatcgggtgtattttgacaacagccaagttaacatttttataatttttgtta 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45391733 tggggttgagatgccgatcagtacaatgtaaatctgtgaaaacaccgtgatcgggtgtattttgacaacagccaagttaacatttttataatttttgtta 45391832  T
Q  101 tgaaacatggcatccacggatgaaggagagaaaaactacgaaaatattgtattgatggtaaagagtaatattacaaatgattgaattgacccactaatgg 200  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45391833 tgaaacatggcatccatggatgaaggagagaaaaactatgaaaatattgtattgatggtaaagaataatattacaaatgattgaattgacccactaatgg 45391932  T
Q  201 ggtggttacaactatatatactactctaggactaatactaattgtgactaaactatatctctaataattttcaaattaaaatttgttnnnnnnnggaatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  45391933 ggtggttacaactatatatactactctaggactaatactaattgtgactaaactatatctctaataattttcaaattaaaatttgttaaaaaaaggaatg 45392032  T
Q  301 aggagccatgtcggtttcattnnnnnnngttttgttagctatgtgtataaatgtgtttcaatcacaaataatttatgagatgttttctcttcgaaaaata 400  Q
    | |||||||||||||||||||       || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  45392033 a-gagccatgtcggtttcattaaaaaaagtattgttagctatgtgtataaatgtgtttcaatcataaataatttatgagatgttttctcttcgaaaaat- 45392130  T
Q  401 aaatgagttgaagagcaagatttt 424  Q
    ||||||||||||||||||||||||    
T  45392131 aaatgagttgaagagcaagatttt 45392154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 27750837 - 27750922
Alignment:
Q  182 tgaattgacccactaatggggtggttacaactatatatactactctaggactaatactaattgtgactaaactatatctctaataa 267  Q
    ||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| | |||||||||||||||||||    
T  27750837 tgaattgtcccactaatgaggtggttacaactatatatactactataggactaatactacttgtaagtaaactatatctctaataa 27750922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 27750714 - 27750761
Alignment:
Q  96 tgttatgaaacatggcatccacggatgaaggagagaaaaactacgaaa 143  Q
    ||||||||||||||||||||| ||||||| ||||||||||||| ||||    
T  27750714 tgttatgaaacatggcatccatggatgaacgagagaaaaactatgaaa 27750761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 225
Target Start/End: Complemental strand, 30866220 - 30866090
Alignment:
Q  96 tgttatgaaacatggcatccacggatgaaggagagaaaaact-acgaaaatattgtattgatggtaaagagtaatattacaaatgattgaattgacccac 194  Q
    ||||| ||||||||  ||||| ||||||||||||||||| || | |||| | || ||||||| |||||  || |||||||||||||   ||||   ||||    
T  30866220 tgttaggaaacatgatatccaaggatgaaggagagaaaagcttatgaaattgttctattgatagtaaaatgtgatattacaaatgagaaaattattccac 30866121  T
Q  195 taatggggtggttacaactatatatactact 225  Q
    |||||||||  |||||| |||||||||||||    
T  30866120 taatggggttattacaagtatatatactact 30866090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 96 - 273
Target Start/End: Original strand, 52737829 - 52738005
Alignment:
Q  96 tgttatgaaacatggcatccacggatgaaggagagaaaaactacgaaaatattgtattgatggtaaagagtaatattacaaa-tgattgaattgacccac 194  Q
    ||||| ||||||||  ||| | ||||||||||||||||| ||| |||| |  |||||||||  ||| |||| |||||||||| ||| ||| || ||||||    
T  52737829 tgttaggaaacatgatatctaaggatgaaggagagaaaagctatgaaact--tgtattgatattaatgagtgatattacaaaatgagtgagttaacccac 52737926  T
Q  195 taatggggtggttacaactatatatactactctaggactaatactaattgtgactaaactatatctctaataattttca 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||||||||||||| ||||    
T  52737927 taatggggtggttacaactatatatactactctaggactaatactacttgaagctaaactatatctctaataatattca 52738005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 35240344 - 35240244
Alignment:
Q  167 aatattacaaatgattgaattgacccactaatggggtggttacaactatatatactactctaggactaatactaattgtgactaaactatatctctaata 266  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  35240344 aatattacaaataagtgaattaacccactaatggggtggttacaactatatatactactctagaactaatactaaccgtgactaaactatatctctaata 35240245  T
Q  267 a 267  Q
    |    
T  35240244 a 35240244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 21025067 - 21025162
Alignment:
Q  96 tgttatgaaacatggcatccacggatgaaggagagaaaaactacgaaaatattgtattgatggtaaagagtaatattacaaatgattgaattgacc 191  Q
    |||||||||||||||||| ||  ||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  21025067 tgttatgaaacatggcattcatagatgaaggaaagaaaaactatgaaaatattatattgatggtaaagagtaatattacaaatgattgtattgacc 21025162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 147 - 266
Target Start/End: Original strand, 27825745 - 27825864
Alignment:
Q  147 ttgtattgatggtaaagagtaatattacaaatgattgaattgacccactaatggggtggttacaactatatatactactctaggacta-atactaattgt 245  Q
    ||||||||||| ||||| | |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||  ||||| |||     
T  27825745 ttgtattgatgataaagtg-aatattacaaatgagtgaattgacccactaatggggtggctacaactatatatactactataggactatttactacttga 27825843  T
Q  246 gactaaactatatctctaata 266  Q
       ||||||||||||||||||    
T  27825844 agttaaactatatctctaata 27825864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 10511120 - 10511197
Alignment:
Q  190 cccactaatggggtggttacaactatatatactactctaggactaatactaattgtgactaaactatatctctaataa 267  Q
    ||||||||||||||||||||||||||||||| |||| ||| |||||||||| |||| |||||||||||||||||||||    
T  10511120 cccactaatggggtggttacaactatatatattactatagaactaatactacttgtaactaaactatatctctaataa 10511197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 193 - 267
Target Start/End: Original strand, 10514448 - 10514522
Alignment:
Q  193 actaatggggtggttacaactatatatactactctaggactaatactaattgtgactaaactatatctctaataa 267  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||| |||| |||||| ||||||||||||||    
T  10514448 actaatggggtggttacaactatatatactactatagaactaatactatttgtaactaaattatatctctaataa 10514522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 782933 - 782999
Alignment:
Q  190 cccactaatggggtggttacaactatatatactactctaggactaatactaattgtgactaaactatat 258  Q
    |||||| |||||||||||||||||||||||||||| |  |||||||||||| |||| ||||||||||||    
T  782933 cccacttatggggtggttacaactatatatactacac--ggactaatactacttgtaactaaactatat 782999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 266
Target Start/End: Complemental strand, 40131980 - 40131904
Alignment:
Q  190 cccactaatggggtggttacaactatatatactactctaggactaatactaattgtgactaaactatatctctaata 266  Q
    ||||||||| ||||| |||||||||||||||||||| ||||| |||| ||  |||| |||||||||||| |||||||    
T  40131980 cccactaatagggtgattacaactatatatactactataggattaatgctgcttgtaactaaactatatttctaata 40131904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 33785875 - 33785805
Alignment:
Q  147 ttgtattgatggtaaagagtaatattacaaatgattgaattgacccactaatggggtggttacaactatata 218  Q
    ||||||||||| ||||| | |||| ||||||||| |||||| ||||||||||||||||||||||| ||||||    
T  33785875 ttgtattgatgataaagtg-aatagtacaaatgagtgaattaacccactaatggggtggttacaattatata 33785805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 4607544 - 4607445
Alignment:
Q  126 gagagaaaaactacgaaaatattgtattgatggtaaagagtaatattacaaatgattgaattgacccactaatggggtggttacaactatatatactact 225  Q
    |||||||  |||| |||| | |||||||||| |||||  || |||||||||||||   | ||  |||||||||||||| |||||||||||||||||||||    
T  4607544 gagagaattactatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccactaatggggttgttacaactatatatactact 4607445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 10661850 - 10661905
Alignment:
Q  190 cccactaatggggtggttacaactatatatactactctaggactaatactaattgt 245  Q
    ||||||||||||||||||||||||||||||| || | ||| | |||||||| ||||    
T  10661850 cccactaatggggtggttacaactatatataataatatagaagtaatactacttgt 10661905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 225
Target Start/End: Complemental strand, 17743141 - 17743011
Alignment:
Q  96 tgttatgaaacatggcatccacggatg-aaggagagaaaaactacgaaaatattgtattgatggtaaagagtaatattacaaatgattgaattgacccac 194  Q
    ||||| ||||||||||||||| | | | || ||||||| | ||| |||| | |||||||||| |||||  || |||||||||||||   | ||  |||||    
T  17743141 tgttaggaaacatggcatccatgaaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccac 17743042  T
Q  195 taatggggtggttacaactatatatactact 225  Q
    ||||| | | |||||||||||||||||||||    
T  17743041 taatgagattgttacaactatatatactact 17743011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 225
Target Start/End: Complemental strand, 19044461 - 19044331
Alignment:
Q  96 tgttatgaaacatggcatccacggatg-aaggagagaaaaactacgaaaatattgtattgatggtaaagagtaatattacaaatgattgaattgacccac 194  Q
    ||||| ||||||||||||||| | | | || ||||||| | ||| |||| | |||||||||| |||||  || |||||||||||||   | ||  |||||    
T  19044461 tgttaggaaacatggcatccatgaaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccac 19044362  T
Q  195 taatggggtggttacaactatatatactact 225  Q
    ||||| | | |||||||||||||||||||||    
T  19044361 taatgagattgttacaactatatatactact 19044331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 41326264 - 41326373
Alignment:
Q  160 aaagagtaatattacaaatgattgaattgacccactaatggggtggttacaactatatatactactctaggactaatactaattgtgactaaactatatc 259  Q
    ||||||| ||||||||||||| |||||  ||||||||||||| |||||||||| ||||||||||||  | ||||||||||||||||| ||||||||||||    
T  41326264 aaagagtgatattacaaatgagtgaatcaacccactaatgggatggttacaaccatatatactactacaagactaatactaattgtgtctaaactatatc 41326363  T
Q  260 tctaataatt 269  Q
    ||||||||||    
T  41326364 tctaataatt 41326373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 147 - 260
Target Start/End: Original strand, 27405358 - 27405470
Alignment:
Q  147 ttgtattgatggtaaagagtaatattacaaatgattgaattgacccactaatggggtggttacaactatatatactactctaggactaatactaattgtg 246  Q
    ||||||||||||||||| | |||||||||||| | |||||||||||| ||||| |||| ||||||||||||||||||||||||||||| ||||| |||      
T  27405358 ttgtattgatggtaaagtg-aatattacaaataagtgaattgacccattaatgaggtgattacaactatatatactactctaggactagtactacttgaa 27405456  T
Q  247 actaaactatatct 260  Q
     |||||||||||||    
T  27405457 gctaaactatatct 27405470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 41949332 - 41949463
Alignment:
Q  95 ttgttatgaaacatggcatccacggatg-aaggagagaaaaactacgaaaatattgtattgatggtaaagagtaatattacaaatgattgaattgaccca 193  Q
    |||||| ||||||||||||||| ||| | || ||||||| | ||| |||| | |||||||||| |||||  ||||||||||||||||   | ||  ||||    
T  41949332 ttgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtaatattacaaatgaggaagttatccca 41949431  T
Q  194 ctaatggggtggttacaactatatatactact 225  Q
    |||||||||| |||||||||||||||||||||    
T  41949432 ctaatggggttgttacaactatatatactact 41949463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 225
Target Start/End: Original strand, 41951731 - 41951861
Alignment:
Q  96 tgttatgaaacatggcatccacggatg-aaggagagaaaaactacgaaaatattgtattgatggtaaagagtaatattacaaatgattgaattgacccac 194  Q
    ||||| ||||||||||||||| ||| | || ||||||| | ||| |||| | ||||||||||  ||||  ||||||||||||||||   | ||  |||||    
T  41951731 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgataataaaatgtaatattacaaatgaggaagttatcccac 41951830  T
Q  195 taatggggtggttacaactatatatactact 225  Q
    ||||||||| |||||||||||||||||||||    
T  41951831 taatggggttgttacaactatatatactact 41951861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 31339208 - 31339270
Alignment:
Q  167 aatattacaaa-tgattgaattgacccactaatggggtggttacaa-ctatatatactactct 227  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||  ||| |||||||||||    
T  31339208 aatattacaaaatgagtgaattgacccactaatggggtggttacaagttatttatactactct 31339270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 15424614 - 15424649
Alignment:
Q  190 cccactaatggggtggttacaactatatatactact 225  Q
    |||||||||||||| |||||||||||||||||||||    
T  15424614 cccactaatggggttgttacaactatatatactact 15424649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 147 - 268
Target Start/End: Complemental strand, 35130631 - 35130510
Alignment:
Q  147 ttgtattgatggtaaagagtaatattacaaatgattgaattgacccactaatggggtggttacaactatatatactactctaggactaatac-taattgt 245  Q
    ||||||||||| ||||| | |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| || |||     
T  35130631 ttgtattgatgataaagtg-aatattacaaatgagtgaattaacccactaatggggtggttacaactatatatactactctaggactagtacttacttga 35130533  T
Q  246 gactaaactatatctctaataat 268  Q
       ||||||||||||||||||||    
T  35130532 agttaaactatatctctaataat 35130510  T

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Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 87 - 273
Target Start/End: Complemental strand, 21215067 - 21214879
Alignment:
Q  87 tataatttttgttatgaaacatggcatccacggatg-aaggagagaaaaactacgaaaatattgtattgatggtaaagagtaatattacaaa-tgattga 184  Q
    ||||| ||||||||  ||||||| |||||| ||| | || ||||||||| ||| | || | |||||||||| |||||   | |||||||||| |||||||    
T  21215067 tataaattttgttagtaaacatgacatccatggaaggaatgagagaaaagctatggaagtgttgtattgatagtaaaatatgatattacaaagtgattga 21214968  T
Q  185 attgacccactaatggggtggttacaactatatatactactctaggactaatactaattgtgactaaactatatctctaataattttca 273  Q
    |||  ||||| | |||||||||||||||||||||||||||| |||||||| ||||| |||   |||||||||||||||||||| |||||    
T  21214967 attagcccacgactggggtggttacaactatatatactactataggactagtactacttgaagctaaactatatctctaataaatttca 21214879  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 26231118 - 26231233
Alignment:
Q  96 tgttatgaaacatggcatccacggatgaaggagagaaaaactacgaaaatattgtattgatggtaaagagtaatattacaaatgattgaattgacccact 195  Q
    ||||||||||||||||||||| |||||||||||||||||  ||  ||| ||||||||| || |||||  || ||||||||||||| |||||||  |||||    
T  26231118 tgttatgaaacatggcatccatggatgaaggagagaaaaggtattaaactattgtattcatagtaaaatgtgatattacaaatgagtgaattgttccact 26231217  T
Q  196 aatggggtggttacaa 211  Q
    ||||||||||||||||    
T  26231218 aatggggtggttacaa 26231233  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 105 - 223
Target Start/End: Original strand, 26231336 - 26231454
Alignment:
Q  105 acatggcatccacggatgaaggagagaaaaactacgaaaatattgtattgatggtaaagagtaatattacaaatgattgaattgacccactaatggggtg 204  Q
    |||||||||||| |||||||||||||||||  || ||||  ||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||| |||||    
T  26231336 acatggcatccatggatgaaggagagaaaagttatgaaacaattgtattgatagtaaagagtgatattacaaatgagtgaattgtcccactaat-gggtg 26231434  T
Q  205 gttacaa-ctatatatacta 223  Q
    ||||||| |||| |||||||    
T  26231435 gttacaagctatttatacta 26231454  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 29849987 - 29850077
Alignment:
Q  96 tgttatgaaacatggcatccacggatgaaggagagaaaaactacgaaaatattgtattgatggtaaagagtaatattacaaatgattgaat 186  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| |||| |||||||||||| ||||| ||| ||||||||||||| |||||    
T  29849987 tgttatgaaacatggcatccatggatgaaggggagaaaaactatgaaactattgtattgatagtaaaaagtgatattacaaatgagtgaat 29850077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 147 - 266
Target Start/End: Original strand, 9905841 - 9905961
Alignment:
Q  147 ttgtattgatggtaaagagtaatattacaaatgattgaa-ttgacccactaatggggtggttacaactatatatactactctaggacta-atactaattg 244  Q
    ||||||||||| ||||| | |||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| ||||||||  ||||| |||    
T  9905841 ttgtattgatgataaagtg-aatattacaaatgagtgaaattgacccactaatggggtggctacaactatatatactactataggactatttactacttg 9905939  T
Q  245 tgactaaactatatctctaata 266  Q
       |||||||||||||||||||    
T  9905940 aagctaaactatatctctaata 9905961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 147 - 266
Target Start/End: Original strand, 9908232 - 9908352
Alignment:
Q  147 ttgtattgatggtaaagagtaatattacaaatgattgaa-ttgacccactaatggggtggttacaactatatatactactctaggacta-atactaattg 244  Q
    ||||||||||| ||||| | |||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| ||||||||  ||||| |||    
T  9908232 ttgtattgatgataaagtg-aatattacaaatgagtgaaattgacccactaatggggtggctacaactatatatactactataggactatttactacttg 9908330  T
Q  245 tgactaaactatatctctaata 266  Q
       |||||||||||||||||||    
T  9908331 aagctaaactatatctctaata 9908352  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 29850671 - 29850747
Alignment:
Q  194 ctaatggggtggttacaactatatatactactctaggactaatactaattgtgactaaactatatctctaataattt 270  Q
    |||||||||||||||||||||||||||||||| ||  | |||||||| |||| ||||||||||||||||||||||||    
T  29850671 ctaatggggtggttacaactatatatactactataaaattaatactacttgtaactaaactatatctctaataattt 29850747  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 174 - 266
Target Start/End: Original strand, 29908101 - 29908193
Alignment:
Q  174 caaatgattgaattgacccactaatggggtggttacaactatatatactactctaggactaatactaattgtgactaaactatatctctaata 266  Q
    ||||||| | ||||| ||||||||||  ||||||||||||||||| |||||| |||||||||||||| |||| ||||| ||||||||||||||    
T  29908101 caaatgagttaattgtcccactaatgaagtggttacaactatatacactactataggactaatactacttgtaactaacctatatctctaata 29908193  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 5690897 - 5690766
Alignment:
Q  95 ttgttatgaaacatggcatccacggatg-aaggagagaaaaactacgaaaatattgtattgatggtaaagagtaatattacaaatgattgaattgaccca 193  Q
    |||||||||||||||||||||| ||| | || ||||||| | ||| |||| | |||||||||| |||||  ||||||||||||||||   | ||  ||||    
T  5690897 ttgttatgaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtaatattacaaatgaggaagttatccca 5690798  T
Q  194 ctaatggggtggttacaactatatatactact 225  Q
    || ||||||| |||||||||||||||||||||    
T  5690797 ctcatggggttgttacaactatatatactact 5690766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 29907945 - 29908011
Alignment:
Q  96 tgttatgaaacatggcatccacggatgaaggagagaaaaactacgaaaatattgtattgatggtaaa 162  Q
    ||||||||||||||| ||||| |||||||||||||||||||||  ||| |||||||||||| |||||    
T  29907945 tgttatgaaacatggtatccatggatgaaggagagaaaaactataaaactattgtattgatagtaaa 29908011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 24249752 - 24249697
Alignment:
Q  205 gttacaactatatatactactctaggactaatactaattgtgactaaactatatct 260  Q
    ||||||||||||||||||||| |||||||||| ||| |||| | ||||||||||||    
T  24249752 gttacaactatatatactactataggactaatgctacttgtaagtaaactatatct 24249697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 4555715 - 4555649
Alignment:
Q  190 cccactaatggggtggttacaactatatatactactctaggactaatactaattgtgactaaactatat 258  Q
    |||||| ||| |||||||||||||||||||||||  | ||||||| ||||| |||| ||||||||||||    
T  4555715 cccacttatgaggtggttacaactatatatacta--ccaggactagtactacttgtaactaaactatat 4555649  T

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Target: scaffold0017 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 183009 - 182935
Alignment:
Q  194 ctaatggggtggttacaactatatatactactctaggactaatactaa-ttgtgactaaactatatctctaataa 267  Q
    |||||| ||||| ||||||||||||||||||| || ||||||| |||| |||| | ||| || ||||||||||||    
T  183009 ctaatgaggtggctacaactatatatactactataagactaatgctaacttgtaagtaacctttatctctaataa 182935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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