View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15614_low_4 (Length: 366)
Name: NF15614_low_4
Description: NF15614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15614_low_4 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 94 - 366
Target Start/End: Original strand, 53424378 - 53424650
Alignment:
| Q |
94 |
aactttatattgatggtgtatatccattaatcttcttgatataccgtaaattaaattaaaaaactttaaaatgcataccttgttgaattgacatattgga |
193 |
Q |
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| T |
53424378 |
aactttatattgatggtgtatatccattaatcttcttgatataccgtaaattaaattaaaaaactttaaaatgcataccttgttgaattgacatattgga |
53424477 |
T |
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| Q |
194 |
ggattgtggcagcatcttttgttcttaccacggttgctgggaaatcataatttcttgcctctcctccttcttggtcaataatatgaacaagacctaatcc |
293 |
Q |
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| T |
53424478 |
ggattgtggcagcatctcttgttcttaccacggttgctgggaagtcataatttcttgcctctcctccttcttggtcaataatatgaacaagacctaatcc |
53424577 |
T |
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| Q |
294 |
acccatctcttgcaccattttaatcttgtcatagattgtgtaaccatcatctatgccatcaaatatgtcaatc |
366 |
Q |
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| T |
53424578 |
acccatctcttgcgccattttaatcttgtcatagattgtgtaaccatcatctatgccatcacatatgacaatc |
53424650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 53424066 - 53424158
Alignment:
| Q |
11 |
gagatgaactcaaagtgtaaaattggattacattgaaaaccaatcacaaattgaatagttctgattgaatgtgagtgtaaaataactttatat |
103 |
Q |
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| T |
53424066 |
gagatgaactcaaagtgtaaaattggattacattgaaaaccaatcacaaattgaatagttctaattgaatgtgagtgtaaaataactttatat |
53424158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 150 - 309
Target Start/End: Complemental strand, 48374134 - 48373972
Alignment:
| Q |
150 |
taaaaaactttaaaatgcataccttgttgaattgacatattggaggattgtggcagcatcttttgttcttaccacggttgctgggaaat---cataattt |
246 |
Q |
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| T |
48374134 |
taaaaacctttaaaatgcttacctcgttgaattgacatatttgaggagtgtgacaacatcttttgatcttaccactgttgctgggaagtctgcataaata |
48374035 |
T |
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| Q |
247 |
cttgcctctcctccttcttggtcaataatatgaacaagacctaatccacccatctcttgcacc |
309 |
Q |
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| T |
48374034 |
tttgccacagctccatcctggtcagtaatatgaacaagacctaatccacccgcctcttgcacc |
48373972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 164 - 344
Target Start/End: Original strand, 53431594 - 53431777
Alignment:
| Q |
164 |
atgcataccttgttgaattgacatattggaggattgtggcagcatcttttgttcttaccacggttgctgggaaat---cataatttcttgcctctcctcc |
260 |
Q |
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| T |
53431594 |
atgcataccttgttgaattggcgtattggaggagtgtggcaacatcttttgatcttaccactgttgctgggaagtctccataactacgtatcatagctcc |
53431693 |
T |
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| Q |
261 |
ttcttggtcaataatatgaacaagacctaatccacccatctcttgcaccattttaatcttgtcatagattgtgtaaccatcatc |
344 |
Q |
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| T |
53431694 |
atcctggtcagtaatatgaacaagacctaatccacccatcccttgcaccgttttaattttgttattggttgagtaatcatcatc |
53431777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 53308910 - 53308955
Alignment:
| Q |
154 |
aaactttaaaatgcataccttgttgaattgacatattggaggattg |
199 |
Q |
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| T |
53308910 |
aaactttataatgcttaccttgttgaattgacatattggagtattg |
53308955 |
T |
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