View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15615_high_2 (Length: 448)
Name: NF15615_high_2
Description: NF15615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15615_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 3668080 - 3668418
Alignment:
| Q |
1 |
tagatagggtataaattgtgattgcaatgttgttacaaagatatatttgactaatactgaattatattttgcttttgnnnnnnnatatgatgattttaga |
100 |
Q |
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| T |
3668080 |
tagatagggtataaattgtgattgcaatgttgttacaaagatatatttgactaatactgaattatattttgcttttgtttttttatatgatgattttaga |
3668179 |
T |
|
| Q |
101 |
ttccttcatcttatacaaatgagccttcaactgtccaaagcatgaaccaacagcatagcaaggaattagaagagagaaacttctctgagccctctttcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3668180 |
ttccttcatcttatacaaatgagccttcaactgtccaaagcatgaaccaacagcatagcaaggaattagaagagagaaacttctctgagccctctttcca |
3668279 |
T |
|
| Q |
201 |
aacacaaaaacagaccatgcatgatctctttcaatcttccacaagtatgtttcaagtggtaagttgtatttttctttgactacaaattttacttaaaacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3668280 |
aacacaaaaacagaccatgcatgatctctttcaatcttccacaagtatgtttcaagtggtaagttgtatttttctttgactacaaattttacttaaaacc |
3668379 |
T |
|
| Q |
301 |
aaatatgattatgtgtccatttcttgttttatatgctga |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
3668380 |
aaatatgattatgtgtccatttcttgttttatatgctga |
3668418 |
T |
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