View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15615_high_5 (Length: 314)
Name: NF15615_high_5
Description: NF15615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15615_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 43601787 - 43602040
Alignment:
| Q |
15 |
ggcaattggcaaatgctgatataaatctgggcatatgctagactgagtacaactgaaagggaactgagaattatgtctctcaatgagatggacatcatca |
114 |
Q |
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| T |
43601787 |
ggcaattggcaaatgctgctataaatctgggcatatgctagactgagtacaactgaaagggaactgagaattatgtctccaattgatatg-atatcttca |
43601885 |
T |
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| Q |
115 |
aattatgaaaattatttctgcaccaaaacacagccccgcacatgataaagttgtctctgaaaacagttccacttgacaataatttgcagtctgtcacgtg |
214 |
Q |
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| T |
43601886 |
aattatgaaaattatttctgcaccaaaacacagccccgcacatgataaagttgtctctgaaaacagttccacttgacaataatttgcagtctgtcacgtg |
43601985 |
T |
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| Q |
215 |
catcacgtgccagagctattaatttatagaattgttatccacttaacttaaccag |
269 |
Q |
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| T |
43601986 |
catcacgtgccagagctattaatttatagaatcgttatccacttaacttaaccag |
43602040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 22436329 - 22436220
Alignment:
| Q |
114 |
aaattatgaaaattatttctgcaccaaaacacagccccgcacatgataaagttgtctctgaaaacagttccacttgacaataatttgcagtctgtcacgt |
213 |
Q |
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||||||||||||| ||||||||||||||||| | ||||||||||||||||||| |||| | ||| |||||| ||||||||||||||| ||||||||| | |
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| T |
22436329 |
aaattatgaaaatgatttctgcaccaaaacatactcccgcacatgataaagttgcctcttataacggttccaattgacaataatttgcggtctgtcacat |
22436230 |
T |
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| Q |
214 |
gcatcacgtg |
223 |
Q |
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| T |
22436229 |
gcatcacgtg |
22436220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 22239124 - 22239084
Alignment:
| Q |
114 |
aaattatgaaaattatttctgcaccaaaacacagccccgca |
154 |
Q |
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| T |
22239124 |
aaattatgaaaattatttctgcaccaaaacacagtcccgca |
22239084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 37560642 - 37560602
Alignment:
| Q |
114 |
aaattatgaaaattatttctgcaccaaaacacagccccgca |
154 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
37560642 |
aaattatgaaaattatttctgcaccaaaacacagtcccgca |
37560602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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